Factsheet for Bra024119.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30187	Canola	nucleus	74.59	97.85
AT4G29880.1	Thale cress	nucleus	88.52	86.86
Bra038857.1-P	Field mustard	nucleus, plastid	79.51	75.78
VIT_11s0052g00390.t01	Wine grape	cytosol	57.92	68.83
KRH02753	Soybean	cytosol	64.21	65.28
GSMUA_AchrUn_...	Banana	nucleus	55.74	60.0
KRH37361	Soybean	cytosol	57.92	59.72
GSMUA_Achr1P23570_001	Banana	nucleus	55.74	59.48
PGSC0003DMT400016538	Potato	mitochondrion	58.2	58.68
KRH12356	Soybean	cytosol	57.38	57.85
Solyc12g017480.1.1	Tomato	cytosol	56.56	56.87
Zm00001d002399_P001	Maize	nucleus	37.43	54.58
Bra019126.1-P	Field mustard	cytosol, plastid	58.47	54.18
Bra013944.1-P	Field mustard	cytosol, plastid	57.65	53.02
Os04t0605300-01	Rice	nucleus	50.82	52.84
Zm00001d002402_P001	Maize	cytosol, nucleus, plastid	51.91	52.34
KXG27059	Sorghum	cytosol, nucleus, plastid	51.37	51.79
TraesCS2A01G432800.1	Wheat	cytosol, nucleus, plastid	50.27	50.41
TraesCS2D01G430800.1	Wheat	cytosol, nucleus, plastid	49.73	50.28
TraesCS2B01G454100.1	Wheat	cytosol, nucleus, plastid	49.45	50.0
HORVU2Hr1G101090.6	Barley	plastid	50.82	44.08
Bra026944.1-P	Field mustard	cytosol	32.51	25.7
Bra032935.1-P	Field mustard	plastid	30.87	25.34
Bra034849.1-P	Field mustard	plastid	33.33	24.55
Bra001399.1-P	Field mustard	plastid	32.79	24.1
Bra009140.1-P	Field mustard	cytosol	33.06	24.01
Bra011617.1-P	Field mustard	cytosol	28.96	23.19
Bra028680.1-P	Field mustard	cytosol	15.3	21.21
Bra005960.1-P	Field mustard	cytosol, mitochondrion, nucleus	15.03	20.99
Bra024514.1-P	Field mustard	cytosol	27.05	19.8
Bra017712.1-P	Field mustard	nucleus	28.96	19.45
Bra037271.1-P	Field mustard	cytosol	25.68	18.25
Bra021606.1-P	Field mustard	cytosol	16.39	16.53
Bra027245.1-P	Field mustard	nucleus	23.22	14.53
Bra034850.1-P	Field mustard	nucleus	1.91	11.11

Protein Annotations

EnsemblPlants:Bra024119.1	EnsemblPlants:Bra024119.1-P	EnsemblPlantsGene:Bra024119	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp
PANTHER:PTHR44997	PFAM:PF13855	PFscan:PS51450	SEG:seg	SMART:SM00364	SMART:SM00369
SUPFAM:SSF52058	UniParc:UPI0002540D42	UniProt:M4E5R5	MapMan:35.1	:	:

Description

AT4G29880 (E=2e-157) | protein binding

Coordinates

chrA03:-:27479255..27480538

Molecular Weight (calculated)

41564.0 Da

IEP (calculated)

8.704

GRAVY (calculated)

-0.157

Length

366 amino acids

Sequence
(BLAST)

001: MICEEAYQYQ QLHAQNDHMM TMMMMDLSQS PLSSPILSKN TDNNEEERLE DVNLSCMALQ SLPNPSLNLG IICKLDLSNN HIKKIPESLT ARLLNLVALD
101: IHSNQIKALP NSIGCLSKLK ILNVSGNFLV YLPKTIQNCR SLEELNANFN ELIRLPDSIG LELTNLRKLC VNSNKLITLP TSITYLTSLR VLDARLNCLM
201: ILPEDLENLI NLEILNVSQN FQYLTTLPSS IGLLMNLLEL DISYNKITVL PESIGCMRRL KKLSAEGNPI VSPPIEVVEQ SLQAVREYLS QKMNGRLVNA
301: SPKKKSWGFR KLVKYGTFNG RSRAWTREER EGLIMPEYRP IDILASNRFP GISPRRIFSP RTYFSR

Best Arabidopsis Sequence Match ( AT4G29880.1 )
(BLAST)

001: MICEDAYQYQ QLHGQKDHMM TMMMMDLSTS PPSSPLSPSL SPKSPSYNNN EEERLEVVNL SGMALQSLPN PSLNLANICK LDLSNNHIKK IPESLTARLL
101: NLIALDIHSN QIKALPNSIG CLSKLKILNV SGNFLVSLPQ TIQNCRSLEE LNANFNELIR LPDNIGLELT NLKKLCVNSN KLISLPATIT CLTSLRVLDA
201: RLNCLMILPE DLENLINLEI LNVSQNFQYL SALPSSIGLL LNLLELDISY NKITVLPESI GCMRRLRKLS AEGNPLVSPP IEVVEQSLHA VREYLSQKMN
301: GKLVNTAAKK KTWGFRKLVK YGTFNGRSRV WTREEREGLI MPEYRPIDIL TSTKFPVTCS PRRLFSPRTY FSR

Arabidopsis Description

PIRL7PIRL7 [Source:UniProtKB/TrEMBL;Acc:A0A178UXC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.