CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28950	Soybean	cytosol	93.73	94.89
KRH39397	Soybean	nucleus	73.17	76.22
KRH07815	Soybean	cytosol	71.95	75.36
VIT_07s0031g02310.t01	Wine grape	cytosol	71.08	73.25
CDX72539	Canola	nucleus	48.61	70.99
GSMUA_Achr5P23850_001	Banana	cytosol	66.2	68.97
AT4G35470.1	Thale cress	nucleus	65.51	68.49
GSMUA_Achr8P25490_001	Banana	nucleus	65.68	68.17
Bra024514.1-P	Field mustard	cytosol	59.06	67.8
CDY66405	Canola	cytosol	59.06	67.8
CDY07843	Canola	nucleus	58.54	67.2
PGSC0003DMT400035497	Potato	cytosol	66.9	67.13
PGSC0003DMT400059678	Potato	nucleus	65.85	66.43
CDX75505	Canola	cytosol	62.2	66.11
CDY40632	Canola	nucleus	62.72	66.06
Bra017712.1-P	Field mustard	nucleus	62.72	66.06
Solyc02g082350.2.1	Tomato	nucleus	66.38	66.03
CDX69142	Canola	cytosol	62.37	65.81
AT2G17440.1	Thale cress	cytosol	60.28	65.78
Bra037271.1-P	Field mustard	cytosol	58.71	65.44
CDY30364	Canola	cytosol	58.19	65.36
Bra011617.1-P	Field mustard	cytosol	51.22	64.33
CDY26809	Canola	nucleus	59.41	63.86
TraesCS7B01G143600.3	Wheat	nucleus	56.79	57.5
TraesCS7D01G246700.1	Wheat	nucleus	56.45	56.84
TraesCS7A01G247900.2	Wheat	cytosol	56.45	56.84
Zm00001d031470_P001	Maize	plasma membrane	56.97	56.67
EES14257	Sorghum	nucleus	56.45	56.06
Os08t0511700-00	Rice	plasma membrane	53.83	53.83
KRH04326	Soybean	cytosol	44.08	48.84
KRH58211	Soybean	mitochondrion	15.85	38.56
KRH54661	Soybean	cytosol	15.33	33.72
KRH63260	Soybean	cytosol	15.33	33.72
KRH02753	Soybean	cytosol	20.38	32.5
KRH37361	Soybean	cytosol	19.69	31.83
KRH12356	Soybean	cytosol	19.51	30.85
KRH74520	Soybean	cytosol	23.52	29.28
KRH63625	Soybean	nucleus	23.69	26.51
KRH57134	Soybean	plastid	23.52	26.42
GSMUA_Achr6P03430_001	Banana	nucleus	21.08	25.64
KRG98234	Soybean	cytosol	12.54	19.2
KRH30190	Soybean	cytosol, nucleus, peroxisome, plastid	10.1	18.41
KRH22120	Soybean	cytosol	17.42	17.15
KRH27219	Soybean	cytosol	17.07	16.72

Protein Annotations

EntrezGene:100787496	Gene3D:3.80.10.10	MapMan:35.1	EMBL:ACUP02000616	EnsemblPlantsGene:GLYMA_01G157000	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	UniProt:I1J8A7	InterPro:IPR001611
InterPro:IPR032675	EnsemblPlants:KRH76512	ProteinID:KRH76512	ProteinID:KRH76512.1	ProteinID:KRH76513.1	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF13855	PRINTS:PR00019	PFscan:PS51450	PANTHER:PTHR44513
PANTHER:PTHR44513:SF1	SMART:SM00364	SMART:SM00369	SUPFAM:SSF52058	UniParc:UPI00023379F9	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:49464953..49468311

Molecular Weight (calculated)

63704.4 Da

IEP (calculated)

7.407

GRAVY (calculated)

-0.333

Length

574 amino acids

Sequence
(BLAST)

001: MECWNSVDGV VEEIMRIHRS LPARPGIDEV EAARGLIGNV EKEDQARLEA IARQSKGVDV PEELFMVLQE MQRNVLYYQS KEQKREAVKL LDLDNVHSLF
101: DELIQRASKC VASPSAKTSY SNGSASSVST SLSKNSVSNS VSVGGFDKPP LAPTAAAATT TTSRKFNVEK ERSELVTRDD SYVKKAKSSF YSNGYGFEPT
201: IPSKASILDS SLKPTSTAGQ DGDKLSLIKL ASLIEVSAKK GTRDLKLQNK LMDQVDWLPD SIGKLSSLVT LDLSENRIMA LPATIGGLSS LTRLDLHSNR
301: ITELPDSVGN LLSLLYLDLR GNQLTLLPAS FSRLVRLEEL DLSSNQLSAL PDSIGSLVRL KILNVETNDI EELPHSVGSC SSLRELRVDY NRLKALPEAV
401: GKIQSLEILS VRYNNIKQLP TTMSSLTNLK ELNVSFNELE SVPESLCFAT SLVKMNIGNN FADMRSLPRS IGNLELLEEL DISNNQIRVL PESFRMLTRL
501: RVLRAEENPL EVPPREIAEK GAQAVVQYMD ELVEKREKKD VKAQPLKQKK SWAQICFFSK SNKRKRDGVD YVKT

Best Arabidopsis Sequence Match ( AT4G35470.1 )
(BLAST)

001: MDLMQMDKRL DSTEQVVEEI MRIHRSLPAR PGIDEVEAAK GLIDNVEKED QACLEAIARQ RKSSEVPGEL FMVLQEMKKG YVQFRSKEQI REALKLLDLE
101: SVHSLFDDFI QRASNCIASP SSNGSVSSRP PLPPATTTAA RSDSQSSLNF SERAPVRPKD MVSRDDSFVT KSKPSSLYSD GFAAPPRRPQ ILDSTLTTGN
201: DGEKLSLIKL ASLIEVSAKK ATQEINLQNK LTEQLEWLPD SLGKLSSLTS LDLSENHIVV LPNTIGGLSS LTKLDLHSNR IGQLPESIGE LLNLVYLNLG
301: SNQLSSLPSA FSRLVRLEEL DLSCNNLPIL PESIGSLVSL KKLDVETNDI EEIPYSIGGC SSLIELRADY NKLKALPEAI GKITTLEILS VRYNNIRQLP
401: TTMSSLASLK ELDVSFNELE SVPESLCFAT TLVKLNIGNN FADMVSLPRS IGNLEMLEEL DISNNQIRVL PDSFKMLTKL RVFRAQENPL HIPPRDIAEK
501: GPQAVVQYMN DLVETRNAKS LMVKPKKSWV QMCFFSKSNK RKQSSMEIV

Arabidopsis Description

PIRL4Plant intracellular Ras-group-related LRR protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.