CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57134	Soybean	plastid	69.4	69.67
VIT_17s0000g09230.t01	Wine grape	cytosol	59.26	67.71
GSMUA_Achr1P13500_001	Banana	plastid	59.06	61.96
CDX73881	Canola	cytosol	51.85	61.86
CDY00732	Canola	cytosol	51.46	61.4
CDY01012	Canola	plastid	56.53	60.67
Bra034849.1-P	Field mustard	plastid	58.28	60.16
CDY08535	Canola	plastid	57.7	59.56
CDX98871	Canola	cytosol	55.75	59.21
CDX70122	Canola	cytosol	55.75	59.21
Bra001399.1-P	Field mustard	plastid	56.92	58.63
AT3G11330.1	Thale cress	plastid	56.92	58.52
GSMUA_Achr8P28520_001	Banana	cytosol, nucleus, plastid	56.92	58.28
Bra009140.1-P	Field mustard	cytosol	57.12	58.13
AT5G05850.1	Thale cress	plastid	57.31	58.1
PGSC0003DMT400046655	Potato	cytosol	58.67	57.22
Solyc03g112270.2.1	Tomato	cytosol, nucleus, plastid	58.48	57.03
KRH74520	Soybean	cytosol	48.73	54.23
EES10994	Sorghum	plastid	52.83	53.03
Zm00001d025681_P001	Maize	plasma membrane	51.85	52.99
TraesCS2D01G335800.1	Wheat	cytosol, plastid	51.46	52.59
TraesCS2A01G327100.1	Wheat	cytosol, plastid	51.27	52.29
TraesCS2B01G354900.1	Wheat	plastid	51.07	52.19
HORVU7Hr1G066320.3	Barley	cytosol	27.88	51.07
Os02t0593600-01	Rice	plasma membrane	49.71	50.9
TraesCS6D01G191800.1	Wheat	plastid	47.37	49.29
EES05350	Sorghum	plastid	48.15	49.11
HORVU2Hr1G082540.6	Barley	cytosol, mitochondrion	38.4	48.05
HORVU6Hr1G053210.1	Barley	cytosol, plastid	46.98	46.71
Zm00001d017071_P002	Maize	plastid	48.15	46.69
KRH02753	Soybean	cytosol	25.34	36.11
KRH37361	Soybean	cytosol	24.56	35.49
KRH12356	Soybean	cytosol	24.56	34.71
KRH54661	Soybean	cytosol	14.81	29.12
KRH63260	Soybean	cytosol	14.62	28.74
KRH58211	Soybean	mitochondrion	12.48	27.12
KRH04326	Soybean	cytosol	25.73	25.48
KRH76512	Soybean	nucleus	26.51	23.69
KRH28950	Soybean	cytosol	26.12	23.63
KRH39397	Soybean	nucleus	25.15	23.41
KRG98234	Soybean	cytosol	16.96	23.2
KRH07815	Soybean	cytosol	24.76	23.18
KRH30190	Soybean	cytosol, nucleus, peroxisome, plastid	12.87	20.95
KRH22120	Soybean	cytosol	20.08	17.67
KRH27219	Soybean	cytosol	19.88	17.41

Protein Annotations

EntrezGene:100803823	Gene3D:3.80.10.10	MapMan:35.1	EMBL:ACUP02002704	ncoils:Coil	EnsemblPlantsGene:GLYMA_04G188000
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1JXB6	InterPro:IPR001611	InterPro:IPR032675
EnsemblPlants:KRH63625	ProteinID:KRH63625	ProteinID:KRH63625.1	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp
PFAM:PF13855	PRINTS:PR00019	PFscan:PS51450	PANTHER:PTHR44373	PANTHER:PTHR44373:SF3	SMART:SM00364
SMART:SM00369	SUPFAM:SSF52058	UniParc:UPI000233A976	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:45871046..45874622

Molecular Weight (calculated)

57456.7 Da

IEP (calculated)

4.451

GRAVY (calculated)

-0.350

Length

513 amino acids

Sequence
(BLAST)

001: MDPNPGTFPL LSYIMSRLPS LTPRPAAPAP SDSDQFDIEQ PPEIVGQMPH LADPELVASM GRAVAQVTQA RSVLTLIGER PTHEEVDNAR AKLADVEAQL
101: SRELEEIVLQ ARPAEIEIQG WRAQQAERER ECRERAETER RVWRSVLQLD EMHEAYEKLL KDAEKRLVKM YESKEDGGGG DADLAYGEEV NEEVVGILQE
201: AYGKGMERID LSGRQLKLLP EAFGRISGLL VFDLSTNQLS AIPDSIAGLQ NLEELNLSSN LLESLPDSIG LLQKLKLLNV SGNKLTALPD SICQCRSLVE
301: LDVSFNNLSY LPTNIGYELP NLQKLMIYLN KIRSFPSSIC ELKSLHYLDA HFNELHGLPI AIGRLTNLEV LNLSSNFSDL KELPETFGDL ANLRELDLSN
401: NQIHALPDTF GRLDNLIKLN LEQNPLELPP MEIVNQGLEA IKTFMAKRWL DILLEEERKS NQEMQEPEQG GWLTRSTFWL KNVSGNVIGY IGTTVGSPMS
501: PKSPRDAYLD QQL

Best Arabidopsis Sequence Match ( AT3G11330.1 )
(BLAST)

001: MAAEPNPKNF PVLSYVLARL PSFTAKSPSS SVPPFDIEQP PPSSSSSSIE IVTQMPHLTQ PDVLASMTSA ISDVAETRSI LRTLGPRPDH ESVDKARAKL
101: SEIESFLSES FEDIALTDAA AKDEKRRQEM DQEKTWCESI LKLDEVHASY EKLLKEAEER LVRIYESAEK NAAEDEENVA AVEVNEEVVG ILQHASANPV
201: DRVDLSGRKL RLLPEAFGRI QGLLVLNLSN NKLESIPDSI AGLHSLVELD VSTNSLETLP DSIGLLSKLK ILNVSTNKLT SLPDSICRCG SLVILDVSFN
301: RLTYLPTNIG PELVNLEKLL VQYNKIRSFP TSIGEMRSLK HLDAHFNELN GLPDSFVLLT NLEYLNLSSN FSDLKDLPFS FGELISLQEL DLSNNQIHAL
401: PDTFGTLDSL TKLNVDQNPL VVPPEEVVKE GVEAVKTYMG QRRISMLEEE EKKKMEEEME QANAGWLTRT TSKLKTYVAD VSEYLGSNSP RDPYLERQL

Arabidopsis Description

PIRL9Plant intracellular Ras-group-related LRR protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.