CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70122	Canola	cytosol	99.79	99.79
Bra009140.1-P	Field mustard	cytosol	99.59	95.44
AT5G05850.1	Thale cress	plastid	92.75	88.54
CDX73881	Canola	cytosol	67.7	76.05
CDY00732	Canola	cytosol	67.49	75.81
CDY01012	Canola	plastid	71.84	72.59
CDY08535	Canola	plastid	73.08	71.03
GSMUA_Achr1P13500_001	Banana	plastid	61.08	60.33
VIT_17s0000g09230.t01	Wine grape	cytosol	54.45	58.57
GSMUA_Achr8P28520_001	Banana	cytosol, nucleus, plastid	60.04	57.88
KRH57134	Soybean	plastid	59.21	55.97
KRH63625	Soybean	nucleus	59.21	55.75
Zm00001d025681_P001	Maize	plasma membrane	55.07	52.99
PGSC0003DMT400046655	Potato	cytosol	56.31	51.71
TraesCS2B01G354900.1	Wheat	plastid	53.62	51.59
TraesCS2D01G335800.1	Wheat	cytosol, plastid	53.62	51.59
TraesCS2A01G327100.1	Wheat	cytosol, plastid	53.62	51.49
EES10994	Sorghum	plastid	54.45	51.47
Solyc03g112270.2.1	Tomato	cytosol, nucleus, plastid	55.49	50.95
TraesCS6D01G191800.1	Wheat	plastid	51.97	50.91
Os02t0593600-01	Rice	plasma membrane	52.8	50.9
HORVU7Hr1G066320.3	Barley	cytosol	28.36	48.93
EES05350	Sorghum	plastid	50.72	48.71
HORVU6Hr1G053210.1	Barley	cytosol, plastid	51.76	48.45
CDY69629	Canola	cytosol	33.95	48.24
CDY16042	Canola	cytosol	45.55	47.52
CDY26604	Canola	cytosol	45.55	47.52
Zm00001d017071_P002	Maize	plastid	51.14	46.69
CDY48988	Canola	cytosol	45.55	46.51
HORVU2Hr1G082540.6	Barley	cytosol, mitochondrion	39.13	46.1
CDY30187	Canola	nucleus	22.77	39.43
CDY42760	Canola	cytosol, plastid	27.54	33.67
CDY46713	Canola	nucleus	25.26	33.33
CDX89369	Canola	cytosol, plastid	27.33	33.17
CDX94383	Canola	cytosol	27.12	32.91
CDX92748	Canola	cytosol, plasma membrane, plastid	25.26	32.62
CDY39144	Canola	nucleus, plastid	25.26	31.77
CDX82667	Canola	nucleus, plastid	25.26	31.77
CDX72539	Canola	nucleus	24.22	29.77
CDY14024	Canola	mitochondrion	15.53	28.52
CDY40770	Canola	cytosol	15.32	28.03
CDX78316	Canola	cytosol, mitochondrion, nucleus	15.11	27.86
CDX81078	Canola	mitochondrion	14.91	27.48
CDY07843	Canola	nucleus	26.5	25.6
CDY30364	Canola	cytosol	26.92	25.44
CDY66405	Canola	cytosol	26.29	25.4
CDY26809	Canola	nucleus	26.92	24.34
CDX69142	Canola	cytosol	27.12	24.08
CDX75505	Canola	cytosol	26.71	23.89
CDY40632	Canola	nucleus	26.71	23.67
CDY29703	Canola	cytosol	16.56	22.04
CDX97851	Canola	cytosol	16.36	21.76
CDX97667	Canola	nucleus	21.33	17.61
CDY56828	Canola	nucleus	20.7	17.09

Protein Annotations

EnsemblPlants:CDX98871	EnsemblPlantsGene:GSBRNA2T00106974001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	ncoils:Coil
PANTHER:PTHR44373	PFAM:PF13855	PFscan:PS51450	ProteinID:CDX98871	ProteinID:CDX98871.1	SEG:seg
SMART:SM00364	SMART:SM00369	SUPFAM:SSF52058	UniParc:UPI0004EF2908	MapMan:35.1	:

Description

BnaC09g49640D

Coordinates

chrLK031907:-:381307..383448

Molecular Weight (calculated)

53848.1 Da

IEP (calculated)

4.492

GRAVY (calculated)

-0.287

Length

483 amino acids

Sequence
(BLAST)

001: MVTELNPNNF PVLSYVLDRL PSFTAKSSSD GDKPPSKSDP SSSSSHSIEI VTQMPHLAHP DVLASMTSAI ADVSQTRSVL RTLGPRPDHE TVDKARARLA
101: EIDASLSERE AVDQEKTWYN SILKLNELHE SYEKLLKEGE ERLVRIYESA EKNAAAVAEE EAKEVEVNEE VVSILQQAEE KPLDRVDLSG RKLKLLPEAF
201: GRIQGLLVLN LYNNQLEAIP DSIAGLHSLL ELDLSTNFLE TLPDSIGLLS KLKILNVSCN KLTTLPDSIC KCGSLVVLDA SYNNLTYLPT NIGFELVHLE
301: KLLIHLNKIR SLPTSVGEMR SLRYLDAHFN ELNGLPESFG MLTNLEYLNL SSNFSDLQDL PASFGDLISL QELDLSNNQI HSLPDAFGTL VNLTKLNLDQ
401: NPLVVPPEEV VKQGVDAVKM YMGKRWVSML EEEEKMANMK EEMEQANADW LARTTSKLKT YVTEVSEYLG SNSPKDPFLD QQL

Best Arabidopsis Sequence Match ( AT5G05850.1 )
(BLAST)

001: MATELNPKNF PVLSYVLDRL PSFTAKSSSS SDVEPPPSKS DPSSSSNHSI EIVTQMPHLA HPDVLASMTN ATADVSQTRS VLRTLGPRPD HETVDRARAR
101: LREIDASLSE SFEEIALSPN DIDVAEKEQK RREAVEQEKI WYKSILKLNE LHESYEKLLK EAEERLVRIY ESAEKNAAAV AEEEAAEVEV NEEVVSILQQ
201: AAENPLDRVD LSGRKLKLLP EAFGKIQGLL VLNLYNNQLQ AIPDSIAGLH NLLELDVSTN FLETLPDSIG LLSKLKILNV SCNKLTTLPD SICHCGSLVV
301: LDASYNNLTY LPTNIGFELV KLEKLLIHLN KIRSLPTSIG EMRSLRYLDA HFNELNGLPN SFGLLTNLEY LNLSSNFSDL QDLPASFGDL ISLQELDLSN
401: NQIHSLPDAF GTLVNLTKLN LDQNPLVVPP DEVVKQGVDA VKMYMGKRWV SMLEEEEKMA NMKDEMDQTN TDWLTRTTSK LKTYVTEVSE YLGSNPPRDP
501: YLDQQL

Arabidopsis Description

PIRL1Plant intracellular Ras-group-related LRR protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFJ3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.