CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021606.1-P	Field mustard	cytosol	97.25	97.25
CDX97851	Canola	cytosol	96.42	96.42
AT2G30105.1	Thale cress	cytosol	86.78	84.22
VIT_06s0004g07050.t01	Wine grape	cytosol, plastid	63.36	60.53
KRG98234	Soybean	cytosol	61.16	59.2
PGSC0003DMT400052945	Potato	nucleus	60.61	58.51
Solyc06g007250.2.1	Tomato	cytosol	60.06	58.13
KRH30190	Soybean	cytosol, nucleus, peroxisome, plastid	48.21	55.56
TraesCS1D01G141500.1	Wheat	cytosol	57.02	55.5
GSMUA_Achr5P07410_001	Banana	cytosol	57.58	55.0
HORVU1Hr1G037810.14	Barley	cytosol, nucleus, peroxisome	56.47	54.96
TraesCS1A01G142500.1	Wheat	cytosol	56.47	54.96
TraesCS1B01G159200.1	Wheat	cytosol	56.2	54.69
EER94139	Sorghum	cytosol	56.2	54.55
CDY30187	Canola	nucleus	15.98	20.79
CDX73881	Canola	cytosol	21.49	18.14
CDY00732	Canola	cytosol	21.21	17.91
CDY40770	Canola	cytosol	12.67	17.42
CDX78316	Canola	cytosol, mitochondrion, nucleus	12.4	17.18
CDY14024	Canola	mitochondrion	12.4	17.11
CDY01012	Canola	plastid	22.31	16.95
CDX81078	Canola	mitochondrion	12.12	16.79
CDY46713	Canola	nucleus	16.8	16.67
CDX98871	Canola	cytosol	22.04	16.56
CDX70122	Canola	cytosol	22.04	16.56
CDX72539	Canola	nucleus	17.91	16.54
CDY08535	Canola	plastid	22.59	16.5
CDY16042	Canola	cytosol	20.66	16.2
CDY26604	Canola	cytosol	20.66	16.2
CDY42760	Canola	cytosol, plastid	17.36	15.95
CDY39144	Canola	nucleus, plastid	16.53	15.62
CDX82667	Canola	nucleus, plastid	16.53	15.62
CDY69629	Canola	cytosol	14.33	15.29
CDX94383	Canola	cytosol	16.53	15.08
CDX89369	Canola	cytosol, plastid	16.53	15.08
CDX92748	Canola	cytosol, plasma membrane, plastid	15.15	14.71
CDY48988	Canola	cytosol	19.01	14.59
CDY66405	Canola	cytosol	18.73	13.6
CDY07843	Canola	nucleus	18.73	13.6
CDY40632	Canola	nucleus	20.39	13.58
CDX75505	Canola	cytosol	20.11	13.52
CDX69142	Canola	cytosol	19.83	13.24
CDY30364	Canola	cytosol	18.18	12.92
CDY26809	Canola	nucleus	18.73	12.73
CDY56828	Canola	nucleus	18.18	11.28
CDX97667	Canola	nucleus	17.63	10.94

Protein Annotations

Gene3D:3.10.20.90	Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078GYN4	EnsemblPlants:CDY29703	ProteinID:CDY29703
ProteinID:CDY29703.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00043482001	InterPro:IPR000626
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00240
PFAM:PF13855	PFscan:PS50053	PFscan:PS51450	PANTHER:PTHR45377	SMART:SM00213	SMART:SM00364
SMART:SM00369	SUPFAM:SSF52058	SUPFAM:SSF54236	UniParc:UPI0004EE1CAD	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
SEG:seg	:	:	:	:	:

Description

BnaA04g17240DBnaA04g17240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYN4]

Coordinates

chrLK032241:-:430280..432025

Molecular Weight (calculated)

39880.3 Da

IEP (calculated)

8.091

GRAVY (calculated)

-0.170

Length

363 amino acids

Sequence
(BLAST)

001: MAESTIKLTI KFGGRSIPLS VSPDATTKDL KSLLQPITNV LPRGQKLIFK GKVLGETSTL KQSLVGDGAK IMLMASQGLH QGEGPVLKEA STRPISRTIV
101: DQTKPGLVVD KNRADRWKAT GVIALAQANL KEIPEEVWEC GSAARVLDVS ENFIREVPAR ISSITSIHKL FLQGNGLSDE SIQWEGIASL KRLMLLSISH
201: NNLTVLPSEV GSLTSLRQLD VANNKLTSLP NEIGLLTQLE IFKANNNRIT SLPESIGDCS FLMEVDLSAN MLSELPETVT KLSKLKTLEL NNTGLTNLPS
301: VLFKMCLQLS TLGLHNTEIT VESLRQLEGW SEFDERRRTK HQKQIDFRVV GSGQFDEGAD KSW

Best Arabidopsis Sequence Match ( AT2G30105.1 )
(BLAST)

001: MELEDPTMAD STIKLTVKFG GKSIPLSVSP DCTVKDLKSQ LQPITNVLPR GQKLIFKGKV LVETSTLKQS DVGSGAKLML MASQGLHQGE GPILKEASIR
101: PISRTVVSDK VDQRKPSVLV DKNRTDRWKA TGVIALAQAN LKEIPEEVWD CGSGVRVLDI SENFIKEVPA KISSFGSMQK LFLQGNGLSD ESIQWEGIAS
201: LKRLMLLSIS HNNLTVLPSA MGSLTSLRQL DVTNNKLTSL PNELGLLTQL EILKANNNRI TSLPESIGNC SFLMEVDLSA NIISELPETF TKLRNLKTLE
301: LNNTGLKTLP SALFKMCLQL STLGLHNTEI TVEFLRQFEG YDDFDERRRT KHQKQLDFRV VGSGQFDEGA DKSW

Arabidopsis Description

LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Source:UniProtKB/Swiss-Prot;Acc:P0C895]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.