Factsheet for GSMUA_Achr5P07410_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G141500.1	Wheat	cytosol	63.16	64.34
TraesCS1B01G159200.1	Wheat	cytosol	63.16	64.34
TraesCS1A01G142500.1	Wheat	cytosol	63.16	64.34
EER94139	Sorghum	cytosol	63.16	64.17
HORVU1Hr1G037810.14	Barley	cytosol, nucleus, peroxisome	62.63	63.81
VIT_06s0004g07050.t01	Wine grape	cytosol, plastid	61.32	61.32
Solyc06g007250.2.1	Tomato	cytosol	59.74	60.53
PGSC0003DMT400052945	Potato	nucleus	59.74	60.37
KRG98234	Soybean	cytosol	56.84	57.6
CDY29703	Canola	cytosol	55.0	57.58
CDX97851	Canola	cytosol	54.47	57.02
AT2G30105.1	Thale cress	cytosol	56.05	56.95
Bra021606.1-P	Field mustard	cytosol	54.21	56.75
KRH30190	Soybean	cytosol, nucleus, peroxisome, plastid	44.74	53.97
GSMUA_Achr4P03290_001	Banana	cytosol	7.11	19.71
GSMUA_AchrUn_...	Banana	nucleus	16.05	17.94
GSMUA_Achr1P23570_001	Banana	nucleus	15.79	17.49
GSMUA_Achr8P28520_001	Banana	cytosol, nucleus, plastid	22.89	17.37
GSMUA_Achr1P13500_001	Banana	plastid	21.32	16.56
GSMUA_Achr4P03280_001	Banana	plastid	5.26	13.99
GSMUA_Achr4P04360_001	Banana	cytosol	21.05	13.68
GSMUA_Achr5P23850_001	Banana	cytosol	19.21	13.25
GSMUA_Achr4P21530_001	Banana	cytosol	18.16	12.99
GSMUA_Achr4P19230_001	Banana	cytosol	17.63	12.86
GSMUA_Achr8P25490_001	Banana	nucleus	18.68	12.84
GSMUA_Achr6P03430_001	Banana	nucleus	14.74	11.86

Protein Annotations

Gene3D:3.10.20.90	Gene3D:3.80.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr5G07410_001	EnsemblPlants:GSMUA_Achr5P07410_001	EnsemblPlants:GSMUA_Achr5T07410_001	InterPro:IPR000626	InterPro:IPR001611	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	UniProt:M0SWH0	PFAM:PF00240	PFAM:PF13855
PFscan:PS50053	PFscan:PS51450	PANTHER:PTHR45377	SMART:SM00213	SMART:SM00364	SMART:SM00369
SUPFAM:SSF52058	SUPFAM:SSF54236	UniParc:UPI000296CFFB	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	SEG:seg

Description

LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Source:GMGC_GENE;Acc:GSMUA_Achr5G07410_001]

Coordinates

chr5:+:5321128..5329595

Molecular Weight (calculated)

41538.1 Da

IEP (calculated)

7.769

GRAVY (calculated)

-0.171

Length

380 amino acids

Sequence
(BLAST)

001: MEGAKDAGGD RSAITVQVKF CGRTLPVSLP MDATVADLKS LLQPVTNVLT RGQTLICKGK VLADKVSLKS VPVTNGSKVM LIASQGLHQG DGPITKDAAT
101: QSISPRKLID TKQTQVSHTR TNVEKSRSER WKLTGVVALS ECHLEAMPEE VWSCGHSVRV LDVSNNLIRD VPTKVGDLKL LNKLLLNANN ITDESISWEG
201: LSSLKSLTIL SLSHNYLTTL PSAVGTLTSL CQLHIANNKI TSLPDELGLL NQLQILKVAN NRLSSMPSSI GNCRALVEID LSCNLLVDLP ETVGNLQDLK
301: ALILRNNGLK SLPPTLFKMC YQLSTLDLHG TEITNDFLRQ IEGWEDFDER RRSKHQKQLD FRVGSSGVFD EGADDDRALK

Best Arabidopsis Sequence Match ( AT2G30105.1 )
(BLAST)

001: MELEDPTMAD STIKLTVKFG GKSIPLSVSP DCTVKDLKSQ LQPITNVLPR GQKLIFKGKV LVETSTLKQS DVGSGAKLML MASQGLHQGE GPILKEASIR
101: PISRTVVSDK VDQRKPSVLV DKNRTDRWKA TGVIALAQAN LKEIPEEVWD CGSGVRVLDI SENFIKEVPA KISSFGSMQK LFLQGNGLSD ESIQWEGIAS
201: LKRLMLLSIS HNNLTVLPSA MGSLTSLRQL DVTNNKLTSL PNELGLLTQL EILKANNNRI TSLPESIGNC SFLMEVDLSA NIISELPETF TKLRNLKTLE
301: LNNTGLKTLP SALFKMCLQL STLGLHNTEI TVEFLRQFEG YDDFDERRRT KHQKQLDFRV VGSGQFDEGA DKSW

Arabidopsis Description

LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Source:UniProtKB/Swiss-Prot;Acc:P0C895]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.