Factsheet for VIT_06s0004g07050.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
cytosol 3
plasma membrane 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052945	Potato	nucleus	64.74	65.43
Solyc06g007250.2.1	Tomato	cytosol	64.47	65.33
KRG98234	Soybean	cytosol	63.42	64.27
CDX97851	Canola	cytosol	60.53	63.36
CDY29703	Canola	cytosol	60.53	63.36
AT2G30105.1	Thale cress	cytosol	61.84	62.83
Bra021606.1-P	Field mustard	cytosol	59.47	62.26
GSMUA_Achr5P07410_001	Banana	cytosol	61.32	61.32
TraesCS1D01G141500.1	Wheat	cytosol	57.89	58.98
KRH30190	Soybean	cytosol, nucleus, peroxisome, plastid	48.68	58.73
EER94139	Sorghum	cytosol	57.63	58.56
TraesCS1A01G142500.1	Wheat	cytosol	57.37	58.45
HORVU1Hr1G037810.14	Barley	cytosol, nucleus, peroxisome	57.11	58.18
TraesCS1B01G159200.1	Wheat	cytosol	57.11	58.18
VIT_17s0000g09230.t01	Wine grape	cytosol	22.11	18.71
VIT_11s0052g00390.t01	Wine grape	cytosol	13.68	16.88
VIT_17s0000g06940.t01	Wine grape	cytosol	11.58	16.86
VIT_02s0012g01010.t01	Wine grape	cytosol	21.32	15.2
VIT_07s0031g02310.t01	Wine grape	cytosol	21.32	14.54
VIT_19s0014g03000.t01	Wine grape	cytosol, mitochondrion	18.42	11.99

Protein Annotations

EntrezGene:100255265	wikigene:100255265	Gene3D:3.10.20.90	Gene3D:3.80.10.10	MapMan:35.1	EMBL:AM442494
ProteinID:CAN65127	ProteinID:CAN65127.1	ProteinID:CBI15909	ProteinID:CBI15909.3	UniProt:D7SJT3	EMBL:FN594951
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626	InterPro:IPR001611	InterPro:IPR032675
EntrezGene:LOC100255265	wikigene:LOC100255265	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00240
PFAM:PF13855	PFscan:PS50053	PFscan:PS51450	PANTHER:PTHR45377	SMART:SM00213	SMART:SM00364
SMART:SM00369	SUPFAM:SSF52058	SUPFAM:SSF54236	TIGR:TC58808	UniParc:UPI00015C77B9	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_dom	ArrayExpress:VIT_06s0004g07050	EnsemblPlantsGene:VIT_06s0004g07050	EnsemblPlants:VIT_06s0004g07050.t01	unigene:Vvi.6405	RefSeq:XP_002275653
RefSeq:XP_002275653.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:7796568..7803830

Molecular Weight (calculated)

41765.6 Da

IEP (calculated)

7.923

GRAVY (calculated)

-0.162

Length

380 amino acids

Sequence
(BLAST)

001: MENSGTSGGV NDAKTATTIT LNIKFSGRSI PVSVSPNSTV KDLKSLLQPL TNVLTRGQKL IFKGRVLADG MTLRESEITD GAKVMLMASQ GLHQGGGPIL
101: KEAPTRPILR EAAHANPKGN KRSEVFIDKG HLDRWKLTGV IALSECQLKV IPDEVWVCGP SARVLDLNNN FIQDVPVKIG CLSSMQKLLL SANDILDESI
201: SWEGVVSLKS LTVLSLSQNY LTMLPSALGA LTSLRQLHIA SNKLTSLPIQ IGLMTQLEVL KANNNRISTI PTQIGDCNSL IEVEFSSNLL SELPETFSNL
301: QNLKALHLSN NGLKSLPRNL FKMCLQLSTL DLHGTEITMD LLRQFEGWEN FDERRRDKHQ KQLDFRVVDS TAFDEGADKN

Best Arabidopsis Sequence Match ( AT2G30105.1 )
(BLAST)

001: MELEDPTMAD STIKLTVKFG GKSIPLSVSP DCTVKDLKSQ LQPITNVLPR GQKLIFKGKV LVETSTLKQS DVGSGAKLML MASQGLHQGE GPILKEASIR
101: PISRTVVSDK VDQRKPSVLV DKNRTDRWKA TGVIALAQAN LKEIPEEVWD CGSGVRVLDI SENFIKEVPA KISSFGSMQK LFLQGNGLSD ESIQWEGIAS
201: LKRLMLLSIS HNNLTVLPSA MGSLTSLRQL DVTNNKLTSL PNELGLLTQL EILKANNNRI TSLPESIGNC SFLMEVDLSA NIISELPETF TKLRNLKTLE
301: LNNTGLKTLP SALFKMCLQL STLGLHNTEI TVEFLRQFEG YDDFDERRRT KHQKQLDFRV VGSGQFDEGA DKSW

Arabidopsis Description

LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Source:UniProtKB/Swiss-Prot;Acc:P0C895]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.