CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 4
cytosol 3
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30190	Soybean	cytosol, nucleus, peroxisome, plastid	74.4	88.57
VIT_06s0004g07050.t01	Wine grape	cytosol, plastid	64.27	63.42
CDY29703	Canola	cytosol	59.2	61.16
PGSC0003DMT400052945	Potato	nucleus	60.8	60.64
AT2G30105.1	Thale cress	cytosol	60.27	60.43
Solyc06g007250.2.1	Tomato	cytosol	60.0	60.0
Bra021606.1-P	Field mustard	cytosol	57.87	59.78
CDX97851	Canola	cytosol	57.87	59.78
GSMUA_Achr5P07410_001	Banana	cytosol	57.6	56.84
EER94139	Sorghum	cytosol	55.73	55.88
TraesCS1D01G141500.1	Wheat	cytosol	54.13	54.42
TraesCS1A01G142500.1	Wheat	cytosol	53.87	54.16
TraesCS1B01G159200.1	Wheat	cytosol	53.6	53.89
HORVU1Hr1G037810.14	Barley	cytosol, nucleus, peroxisome	53.6	53.89
KRH54661	Soybean	cytosol	12.53	18.01
KRH74520	Soybean	cytosol	21.87	17.79
KRH63260	Soybean	cytosol	12.27	17.62
KRH63625	Soybean	nucleus	23.2	16.96
KRH02753	Soybean	cytosol	16.27	16.94
KRH37361	Soybean	cytosol	16.0	16.9
KRH57134	Soybean	plastid	22.4	16.44
KRH12356	Soybean	cytosol	15.73	16.25
KRH58211	Soybean	mitochondrion	9.33	14.83
KRH04326	Soybean	cytosol	19.47	14.09
KRH07815	Soybean	cytosol	19.2	13.14
KRH39397	Soybean	nucleus	18.93	12.89
KRH28950	Soybean	cytosol	19.2	12.7
KRH76512	Soybean	nucleus	19.2	12.54
KRH22120	Soybean	cytosol	17.6	11.32
KRH27219	Soybean	cytosol	17.6	11.26

Protein Annotations

EntrezGene:100811948	Gene3D:3.10.20.90	Gene3D:3.80.10.10	MapMan:35.1	EMBL:ACUP02010852	EnsemblPlantsGene:GLYMA_18G059000
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626	InterPro:IPR001611	InterPro:IPR032675
UniProt:K7MQ74	EnsemblPlants:KRG98234	ProteinID:KRG98234	ProteinID:KRG98234.1	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00240	PFAM:PF13855	PFscan:PS50053	PFscan:PS51450	PANTHER:PTHR45377
SMART:SM00213	SMART:SM00364	SMART:SM00365	SMART:SM00369	SUPFAM:SSF52058	SUPFAM:SSF54236
UniParc:UPI000233E9E7	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr18:-:5221254..5226837

Molecular Weight (calculated)

41310.4 Da

IEP (calculated)

8.588

GRAVY (calculated)

-0.302

Length

375 amino acids

Sequence
(BLAST)

001: MEANSGASEP NSNATITINV KFSGVSIPIS ISPNSTIKDL KSLLLPSTNV LPRGQKLIFK GKVLEDPMTL TASKLTNGSK LMLVASQCLY QGDGPVLKKA
101: QVVPKSRKDG HSGSSNDMKK IPVKNRMERW KATGVVALSE CNLEAIPDEV WVCGSSARVL DCNKNSIKNI PNEIARLTSL EKLFINANEI VDESIRWEGL
201: TTLKYLTVLS LNHNNLTTLS SALGSLTSLR ELHVSNNKLS GLPNEIGHLT QLEVLRANNN RISIVSDSTG NCHSLVEVDF SSNFLSELPE TFSSLSNLKA
301: LYLGNNGMKS LPSKLFKTCL QLSTLDLHNT EITIDLLRQF EGWDNFDERR RSKHQKQIDF RVGVSRDFDE GADKN

Best Arabidopsis Sequence Match ( AT2G30105.1 )
(BLAST)

001: MELEDPTMAD STIKLTVKFG GKSIPLSVSP DCTVKDLKSQ LQPITNVLPR GQKLIFKGKV LVETSTLKQS DVGSGAKLML MASQGLHQGE GPILKEASIR
101: PISRTVVSDK VDQRKPSVLV DKNRTDRWKA TGVIALAQAN LKEIPEEVWD CGSGVRVLDI SENFIKEVPA KISSFGSMQK LFLQGNGLSD ESIQWEGIAS
201: LKRLMLLSIS HNNLTVLPSA MGSLTSLRQL DVTNNKLTSL PNELGLLTQL EILKANNNRI TSLPESIGNC SFLMEVDLSA NIISELPETF TKLRNLKTLE
301: LNNTGLKTLP SALFKMCLQL STLGLHNTEI TVEFLRQFEG YDDFDERRRT KHQKQLDFRV VGSGQFDEGA DKSW

Arabidopsis Description

LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Source:UniProtKB/Swiss-Prot;Acc:P0C895]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.