Factsheet for Solyc06g007250.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052945	Potato	nucleus	96.53	96.28
VIT_06s0004g07050.t01	Wine grape	cytosol, plastid	65.33	64.47
CDY29703	Canola	cytosol	58.13	60.06
KRG98234	Soybean	cytosol	60.0	60.0
Bra021606.1-P	Field mustard	cytosol	57.87	59.78
GSMUA_Achr5P07410_001	Banana	cytosol	60.53	59.74
CDX97851	Canola	cytosol	57.6	59.5
AT2G30105.1	Thale cress	cytosol	58.4	58.56
TraesCS1D01G141500.1	Wheat	cytosol	57.07	57.37
EER94139	Sorghum	cytosol	57.07	57.22
HORVU1Hr1G037810.14	Barley	cytosol, nucleus, peroxisome	56.8	57.1
TraesCS1A01G142500.1	Wheat	cytosol	56.8	57.1
TraesCS1B01G159200.1	Wheat	cytosol	56.53	56.84
KRH30190	Soybean	cytosol, nucleus, peroxisome, plastid	46.67	55.56
Solyc12g040320.1.1	Tomato	mitochondrion	13.33	19.16
Solyc03g115410.2.1	Tomato	cytosol	12.27	17.76
Solyc12g017480.1.1	Tomato	cytosol	15.2	15.66
Solyc03g112270.2.1	Tomato	cytosol, nucleus, plastid	21.6	15.4
Solyc08g006970.2.1	Tomato	cytosol	20.0	14.76
Solyc02g082350.2.1	Tomato	nucleus	21.07	13.69
Solyc10g006930.2.1	Tomato	cytosol	18.67	11.99

Protein Annotations

Gene3D:3.10.20.90	Gene3D:3.80.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000626	InterPro:IPR001611	InterPro:IPR032675	UniProt:K4C3A8	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00240	PFAM:PF13855	PFscan:PS50053	PFscan:PS51450	PANTHER:PTHR45377
SMART:SM00213	SMART:SM00364	SMART:SM00369	SUPFAM:SSF52058	SUPFAM:SSF54236	EnsemblPlantsGene:Solyc06g007250.2
EnsemblPlants:Solyc06g007250.2.1	UniParc:UPI0002766105	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	:	:

Description

No Description!

Coordinates

chr6:+:1304942..1310377

Molecular Weight (calculated)

41264.8 Da

IEP (calculated)

7.311

GRAVY (calculated)

-0.236

Length

375 amino acids

Sequence
(BLAST)

001: MEKEGKSDAG NRTITVNVRF SGRSIPVEIS DESTVKHLKS LLQPLTNVLS RGQKLIFKGK VLVDEVTLKS SEVGNGAKIM LMASQGLHQG DGPIRKEASN
101: FPTARRMPEA MRPKRDVPQV PVVKSQLERW KATGVVALSE CNLKVLPDEV LNCGPSARVL DLSHNAIQHL PATINSLSSL QKLILNGNEI MDNSLSWEEL
201: ASLKSLMVIS LNQNHIATLP PEVGTLTSLK QLHIAHNELT GLPSEIGLLT SLEVLKVNNN RIHSIPESIG DCVSLIEVDL SSNLLVELPE TISKIKDLKA
301: LYLRNNGLKS LPSSIFKQCC QLSTLDLHGT EITIDVISQI EGWENFDERR RSKHQKQLDF RVSSSGKFDE GADQS

Best Arabidopsis Sequence Match ( AT2G30105.1 )
(BLAST)

001: MELEDPTMAD STIKLTVKFG GKSIPLSVSP DCTVKDLKSQ LQPITNVLPR GQKLIFKGKV LVETSTLKQS DVGSGAKLML MASQGLHQGE GPILKEASIR
101: PISRTVVSDK VDQRKPSVLV DKNRTDRWKA TGVIALAQAN LKEIPEEVWD CGSGVRVLDI SENFIKEVPA KISSFGSMQK LFLQGNGLSD ESIQWEGIAS
201: LKRLMLLSIS HNNLTVLPSA MGSLTSLRQL DVTNNKLTSL PNELGLLTQL EILKANNNRI TSLPESIGNC SFLMEVDLSA NIISELPETF TKLRNLKTLE
301: LNNTGLKTLP SALFKMCLQL STLGLHNTEI TVEFLRQFEG YDDFDERRRT KHQKQLDFRV VGSGQFDEGA DKSW

Arabidopsis Description

LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Source:UniProtKB/Swiss-Prot;Acc:P0C895]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.