Factsheet for VIT_17s0000g09230.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73881	Canola	cytosol	58.8	61.4
CDY00732	Canola	cytosol	58.8	61.4
GSMUA_Achr1P13500_001	Banana	plastid	66.15	60.74
KRH63625	Soybean	nucleus	67.71	59.26
PGSC0003DMT400046655	Potato	cytosol	67.71	57.79
GSMUA_Achr8P28520_001	Banana	cytosol, nucleus, plastid	64.14	57.48
Solyc03g112270.2.1	Tomato	cytosol, nucleus, plastid	67.26	57.41
KRH57134	Soybean	plastid	63.47	55.77
AT5G05850.1	Thale cress	plastid	62.14	55.14
AT3G11330.1	Thale cress	plastid	60.58	54.51
CDX98871	Canola	cytosol	58.57	54.45
CDX70122	Canola	cytosol	58.57	54.45
Bra009140.1-P	Field mustard	cytosol	60.58	53.97
Bra001399.1-P	Field mustard	plastid	59.47	53.61
CDY01012	Canola	plastid	56.79	53.35
Bra034849.1-P	Field mustard	plastid	58.35	52.72
CDY08535	Canola	plastid	58.13	52.52
HORVU7Hr1G066320.3	Barley	cytosol	30.96	49.64
Zm00001d025681_P001	Maize	plasma membrane	54.79	49.0
EES10994	Sorghum	plastid	54.57	47.95
TraesCS2D01G335800.1	Wheat	cytosol, plastid	53.45	47.81
HORVU2Hr1G082540.6	Barley	cytosol, mitochondrion	43.65	47.8
TraesCS2A01G327100.1	Wheat	cytosol, plastid	53.01	47.32
TraesCS2B01G354900.1	Wheat	plastid	52.78	47.21
Os02t0593600-01	Rice	plasma membrane	51.0	45.71
EES05350	Sorghum	plastid	50.56	45.13
TraesCS6D01G191800.1	Wheat	plastid	49.22	44.83
Zm00001d017071_P002	Maize	plastid	50.33	42.72
HORVU6Hr1G053210.1	Barley	cytosol, plastid	48.11	41.86
VIT_11s0052g00390.t01	Wine grape	cytosol	25.84	37.66
VIT_17s0000g06940.t01	Wine grape	cytosol	15.59	26.82
VIT_02s0012g01010.t01	Wine grape	cytosol	28.95	24.39
VIT_07s0031g02310.t01	Wine grape	cytosol	29.62	23.88
VIT_06s0004g07050.t01	Wine grape	cytosol, plastid	18.71	22.11
VIT_19s0014g03000.t01	Wine grape	cytosol, mitochondrion	22.05	16.95

Protein Annotations

EntrezGene:100265719	wikigene:100265719	Gene3D:3.80.10.10	MapMan:35.1	ProteinID:CCB42937	ProteinID:CCB42937.1
ncoils:Coil	UniProt:F6GSH2	EMBL:FN594950	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	EntrezGene:LOC100265719	wikigene:LOC100265719	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF13855	PFscan:PS51450	PANTHER:PTHR44373	SMART:SM00364	SMART:SM00365
SMART:SM00369	SUPFAM:SSF52058	UniParc:UPI000210808E	ArrayExpress:VIT_17s0000g09230	EnsemblPlantsGene:VIT_17s0000g09230	EnsemblPlants:VIT_17s0000g09230.t01
unigene:Vvi.18735	RefSeq:XP_002280677	RefSeq:XP_002280677.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:+:10820979..10825182

Molecular Weight (calculated)

50194.1 Da

IEP (calculated)

4.543

GRAVY (calculated)

-0.247

Length

449 amino acids

Sequence
(BLAST)

001: MTLAISDVAQ TRSVLQTLGE RPDHEAVDKA KAKIVEIDSR LSKQLEEIVL SPRPSSIERL QFRAHQAEKE QECRQAAEKE KQIYKAVVQL DEMHEAYEKL
101: LKEAEERLVK LYESASAFAD DVEHLPVKEE TNEEVVGVLQ EASGKGLERV DLSGRRLRFL PEAFGKIRSL VALNLSCNQL EFIPDSIATL ENLEELNLSS
201: NLLELLPDSI GLLVNLKILD ASGNKLLALP DSICHCRSLV ELDVSFNNLA YLPTNIGYEL VNLKRLSINL NKIRSLPTSI GEMRSLCHLD AHFNELRGLP
301: SAIGRLTNLE TLNLSSNFSD LTELPETIGD LTNLRELDLS NNQIQALPDT FGRLDNLNKL NLDQNPLVIP PMEVVNEGVE AVKVFMAKRW LDILVEEEQK
401: SLLEVKEQTE TGWLTRSTSW LGSVVSGVSQ SVSGYLGPGP RDPYLDQQL

Best Arabidopsis Sequence Match ( AT5G05850.1 )
(BLAST)

001: MATELNPKNF PVLSYVLDRL PSFTAKSSSS SDVEPPPSKS DPSSSSNHSI EIVTQMPHLA HPDVLASMTN ATADVSQTRS VLRTLGPRPD HETVDRARAR
101: LREIDASLSE SFEEIALSPN DIDVAEKEQK RREAVEQEKI WYKSILKLNE LHESYEKLLK EAEERLVRIY ESAEKNAAAV AEEEAAEVEV NEEVVSILQQ
201: AAENPLDRVD LSGRKLKLLP EAFGKIQGLL VLNLYNNQLQ AIPDSIAGLH NLLELDVSTN FLETLPDSIG LLSKLKILNV SCNKLTTLPD SICHCGSLVV
301: LDASYNNLTY LPTNIGFELV KLEKLLIHLN KIRSLPTSIG EMRSLRYLDA HFNELNGLPN SFGLLTNLEY LNLSSNFSDL QDLPASFGDL ISLQELDLSN
401: NQIHSLPDAF GTLVNLTKLN LDQNPLVVPP DEVVKQGVDA VKMYMGKRWV SMLEEEEKMA NMKDEMDQTN TDWLTRTTSK LKTYVTEVSE YLGSNPPRDP
501: YLDQQL

Arabidopsis Description

PIRL1Plant intracellular Ras-group-related LRR protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFJ3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.