CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY22349
CDY60899

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35470.1	CDY22349	AT5G43400.1	21798944
AT4G35470.1	CDY60899	AT5G43400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69142	Canola	cytosol	97.04	96.32
Bra011617.1-P	Field mustard	cytosol	75.74	89.5
CDX72539	Canola	nucleus	62.78	86.26
CDY40632	Canola	nucleus	85.0	84.22
AT4G35470.1	Thale cress	nucleus	83.33	81.97
CDY66405	Canola	cytosol	63.89	69.0
CDY07843	Canola	nucleus	63.33	68.4
CDY30364	Canola	cytosol	63.15	66.73
CDY26809	Canola	nucleus	65.93	66.67
VIT_07s0031g02310.t01	Wine grape	cytosol	64.44	62.48
KRH28950	Soybean	cytosol	65.56	62.43
KRH39397	Soybean	nucleus	63.52	62.25
KRH76512	Soybean	nucleus	66.11	62.2
KRH07815	Soybean	cytosol	62.96	62.04
GSMUA_Achr5P23850_001	Banana	cytosol	60.19	58.98
PGSC0003DMT400059678	Potato	nucleus	62.04	58.88
GSMUA_Achr8P25490_001	Banana	nucleus	60.0	58.59
PGSC0003DMT400035497	Potato	cytosol	61.67	58.22
Solyc02g082350.2.1	Tomato	nucleus	61.48	57.54
TraesCS7B01G143600.3	Wheat	nucleus	56.3	53.62
TraesCS7A01G247900.2	Wheat	cytosol	55.56	52.63
TraesCS7D01G246700.1	Wheat	nucleus	55.37	52.46
Os08t0511700-00	Rice	plasma membrane	55.56	52.26
EES14257	Sorghum	nucleus	55.93	52.25
Zm00001d031470_P001	Maize	plasma membrane	54.81	51.3
CDY30187	Canola	nucleus	17.78	34.41
CDY46713	Canola	nucleus	20.37	30.05
CDY00732	Canola	cytosol	23.52	29.53
CDX73881	Canola	cytosol	23.52	29.53
CDY39144	Canola	nucleus, plastid	20.37	28.65
CDX82667	Canola	nucleus, plastid	20.37	28.65
CDY69629	Canola	cytosol	17.78	28.24
CDX89369	Canola	cytosol, plastid	20.74	28.14
CDX94383	Canola	cytosol	20.56	27.89
CDY26604	Canola	cytosol	23.89	27.86
CDY16042	Canola	cytosol	23.89	27.86
CDY42760	Canola	cytosol, plastid	20.37	27.85
CDY48988	Canola	cytosol	24.26	27.7
CDY14024	Canola	mitochondrion	13.33	27.38
CDY40770	Canola	cytosol	13.33	27.27
CDX78316	Canola	cytosol, mitochondrion, nucleus	13.15	27.1
CDX81078	Canola	mitochondrion	13.15	27.1
CDY01012	Canola	plastid	23.7	26.78
CDX92748	Canola	cytosol, plasma membrane, plastid	18.52	26.74
CDX70122	Canola	cytosol	23.89	26.71
CDX98871	Canola	cytosol	23.89	26.71
CDY08535	Canola	plastid	24.26	26.36
GSMUA_Achr6P03430_001	Banana	nucleus	21.11	24.15
CDX97851	Canola	cytosol	13.52	20.11
CDY29703	Canola	cytosol	13.52	20.11
CDX97667	Canola	nucleus	17.22	15.9
CDY56828	Canola	nucleus	17.22	15.9

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDX75505	ProteinID:CDX75505	ProteinID:CDX75505.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00121403001	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00560	PFAM:PF13516	PFAM:PF13855	PRINTS:PR00019
PFscan:PS51450	PANTHER:PTHR44513	PANTHER:PTHR44513:SF1	SMART:SM00364	SMART:SM00369	SUPFAM:SSF52058
UniParc:UPI0004EE2002	SEG:seg	:	:	:	:

Description

BnaA01g01970D

Coordinates

chrLK031804:+:1420635..1423458

Molecular Weight (calculated)

59774.9 Da

IEP (calculated)

5.229

GRAVY (calculated)

-0.287

Length

540 amino acids

Sequence
(BLAST)

001: MNPLQLDKRL DTTEQVVEEI MRLHRSLPPR PGLDEVEAAT SLIQNVEKED QAWREAIASQ RKPSDVPGEL FSILQEMKKG LVQFKSKEQI REAVKLLDLE
101: TVHSLFDDFI QRASDCISSP SNGSAPPSRL PPRPPQTSLY LNEKTPARPK EMVSRDDSFV SKAKPSLYGD GFVATPGTPQ VVDSTLTAGG NDGEKLSLIK
201: LASLIEVSSK KATKELNLQN KLSEQVEWLP DSIGKLSTLT SLDLSENHIV VLPNTIGGLS SLTNLDLRSN RITHLPESIG ELINLVSLNL SGNQLSSLPS
301: SFSRLLQLEE LNLSCNNLPV LPESIGSLAN LKKLDVETND IEEIPYSIGG CASLTELRAD YNKLKALPEA IGKITTLEIL SVRYNNIRQL PTTMSSLSSL
401: KELDVSFNEL ESVPESLCFA TALVKLNVGN NFADMVSLPR SIGNLEMLEE LDISNNQIRV LPESFRMLTK LRVFRAQENP LQVPPREVAE KGPQAVVQYL
501: NDLVEARNAK SLVVKPKKSW VQMCFFSKSN KKKQSNMEIV

Best Arabidopsis Sequence Match ( AT4G35470.1 )
(BLAST)

001: MDLMQMDKRL DSTEQVVEEI MRIHRSLPAR PGIDEVEAAK GLIDNVEKED QACLEAIARQ RKSSEVPGEL FMVLQEMKKG YVQFRSKEQI REALKLLDLE
101: SVHSLFDDFI QRASNCIASP SSNGSVSSRP PLPPATTTAA RSDSQSSLNF SERAPVRPKD MVSRDDSFVT KSKPSSLYSD GFAAPPRRPQ ILDSTLTTGN
201: DGEKLSLIKL ASLIEVSAKK ATQEINLQNK LTEQLEWLPD SLGKLSSLTS LDLSENHIVV LPNTIGGLSS LTKLDLHSNR IGQLPESIGE LLNLVYLNLG
301: SNQLSSLPSA FSRLVRLEEL DLSCNNLPIL PESIGSLVSL KKLDVETNDI EEIPYSIGGC SSLIELRADY NKLKALPEAI GKITTLEILS VRYNNIRQLP
401: TTMSSLASLK ELDVSFNELE SVPESLCFAT TLVKLNIGNN FADMVSLPRS IGNLEMLEEL DISNNQIRVL PDSFKMLTKL RVFRAQENPL HIPPRDIAEK
501: GPQAVVQYMN DLVETRNAKS LMVKPKKSWV QMCFFSKSNK RKQSSMEIV

Arabidopsis Description

PIRL4Plant intracellular Ras-group-related LRR protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.