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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • extracellular 1
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, extracellular, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:extracellular
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
plasma membrane: 18260611
plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d030062_P001 Maize cytosol 64.27 80.41
TraesCS1D01G194700.1 Wheat cytosol 77.53 78.99
TraesCS1B01G205800.2 Wheat cytosol 77.53 78.69
TraesCS1A01G190500.1 Wheat cytosol 76.98 78.28
KXG38871 Sorghum cytosol 77.16 77.88
Zm00001d047045_P001 Maize extracellular, mitochondrion, plasma membrane 76.24 77.53
HORVU1Hr1G049900.1 Barley cytosol, extracellular, mitochondrion, plastid 76.98 72.95
GSMUA_Achr4P19230_001 Banana cytosol 61.33 63.92
GSMUA_Achr4P21530_001 Banana cytosol 62.06 63.47
PGSC0003DMT400052889 Potato cytosol 45.3 57.61
VIT_02s0012g01010.t01 Wine grape cytosol 55.8 56.85
KRH04326 Soybean cytosol 52.85 55.41
Solyc08g006970.2.1 Tomato cytosol 50.83 54.33
Os08t0511700-00 Rice plasma membrane 47.88 45.3
KRH58211 Soybean mitochondrion 17.86 41.1
Os03t0212200-01 Rice plasma membrane 8.1 30.99
Os04t0605300-01 Rice nucleus 19.52 30.11
Os02t0593600-01 Rice plasma membrane 25.78 27.94
Os02t0826600-01 Rice cytosol 16.21 15.02
Protein Annotations
Gene3D:3.80.10.10MapMan:35.1EntrezGene:4349464ProteinID:AAL86486.1ProteinID:AAP55113.1ProteinID:ABB48010.1
EMBL:AK102709ProteinID:BAF27299.2ProteinID:BAT12165.1ncoils:CoilProteinID:EAZ17053.1GO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0009416GO:GO:0009628GO:GO:0009987GO:GO:0016020
InterPro:IPR001611InterPro:IPR032675InterPro:LRR_dom_sfInterPro:Leu-rich_rptInterPro:Leu-rich_rpt_typical-subtypEnsemblPlantsGene:Os10g0572300
EnsemblPlants:Os10t0572300-01PFAM:PF13855PFscan:PS51450PANTHER:PTHR44513PANTHER:PTHR44513:SF3UniProt:Q8S7M7
SMART:SM00364SMART:SM00369SUPFAM:SSF52058UniParc:UPI00000AA87ARefSeq:XP_015614719.1SEG:seg
Description
intracellular Ras-group-related LRR protein 5Leucine-rich repeat, typical subtype containing protein. (Os10t0572300-01);Similar to Protein lap4. (Os10t0572300-02)
Coordinates
chr10:+:22690792..22695147
Molecular Weight (calculated)
59208.1 Da
IEP (calculated)
4.873
GRAVY (calculated)
-0.105
Length
543 amino acids
Sequence
(BLAST)
001: MASAAEAVEE LTRLYRELPP RPAVEEVEAA EAVLASADAE EAARLDEVAR EEASASASSS AAAPGRADGE LLAVLREARR NAVRLRALQQ RKEAAYVVEL
101: ERRFKVFDDL IQRASRVVSS SSDAAEAGGG TTGDGYVGVG ADSVDLEMEL RKKEAAVAAA AAVAEMERGS KGLAALGLES KPISSLRRDV SAGTDMEKLS
201: LIQVASLIES SAKKGITELS LRGKLVDQIE WLPVSLGKLQ DVTELDLSEN RIMALPSTIG SLRYLTKLDL HSNQLINLPD AFGELSNLID LDLHANQLKS
301: LPSSFGNLTS LANLDLSSNM LKALPDCLGK LANLRRLIVE TNELEELPYT IGSCTSLVEL RLDFNQLKAL PEAIGKLEKL EILTLHYNRI KGLPTTVGSL
401: SRLRELDVSF NEVEVIPENI CFATSLVKLN LSRNFADLRA LPKSIGNLEM LEELDISSNQ IRVLPDSFRC LSRLRVFHAD ETPLEFPPRE VVKLGAQAVV
501: KYMNDLNAAR GTNQKKTDRG SFWTWLFSLF GCCKKNQEVG LPV
Best Arabidopsis Sequence Match ( AT4G35470.1 )
(BLAST)
001: MDLMQMDKRL DSTEQVVEEI MRIHRSLPAR PGIDEVEAAK GLIDNVEKED QACLEAIARQ RKSSEVPGEL FMVLQEMKKG YVQFRSKEQI REALKLLDLE
101: SVHSLFDDFI QRASNCIASP SSNGSVSSRP PLPPATTTAA RSDSQSSLNF SERAPVRPKD MVSRDDSFVT KSKPSSLYSD GFAAPPRRPQ ILDSTLTTGN
201: DGEKLSLIKL ASLIEVSAKK ATQEINLQNK LTEQLEWLPD SLGKLSSLTS LDLSENHIVV LPNTIGGLSS LTKLDLHSNR IGQLPESIGE LLNLVYLNLG
301: SNQLSSLPSA FSRLVRLEEL DLSCNNLPIL PESIGSLVSL KKLDVETNDI EEIPYSIGGC SSLIELRADY NKLKALPEAI GKITTLEILS VRYNNIRQLP
401: TTMSSLASLK ELDVSFNELE SVPESLCFAT TLVKLNIGNN FADMVSLPRS IGNLEMLEEL DISNNQIRVL PDSFKMLTKL RVFRAQENPL HIPPRDIAEK
501: GPQAVVQYMN DLVETRNAKS LMVKPKKSWV QMCFFSKSNK RKQSSMEIV
Arabidopsis Description
PIRL4Plant intracellular Ras-group-related LRR protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVW8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.