Factsheet for VIT_17s0000g02750.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0005g04300.t01
VIT_07s0031g02310.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48630.1	VIT_07s0031g02310.t01	AT4G35470.1	21798944
AT1G48630.1	VIT_07s0005g04300.t01	AT5G43960.1	21798944
AT3G18130.1	VIT_07s0031g02310.t01	AT4G35470.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60497	Soybean	endoplasmic reticulum, nucleus	91.74	92.31
KRH41792	Soybean	nucleus	91.44	92.0
CDY26186	Canola	cytosol	67.28	88.0
CDX96736	Canola	cytosol	66.97	87.6
CDY60778	Canola	cytosol, plastid	66.97	87.6
CDX83869	Canola	cytosol	66.97	87.6
CDY21720	Canola	cytosol	66.67	87.2
CDX81860	Canola	cytosol	66.67	87.2
Solyc03g119040.2.1	Tomato	nucleus	86.24	86.5
Bra031014.1-P	Field mustard	cytosol	86.24	86.24
Bra025931.1-P	Field mustard	cytosol	86.24	85.98
Bra016570.1-P	Field mustard	cytosol	85.93	85.93
PGSC0003DMT400074094	Potato	cytosol	85.63	85.89
Solyc06g069010.2.1	Tomato	nucleus	85.63	85.89
PGSC0003DMT400040923	Potato	cytosol	85.93	85.41
Solyc12g040510.1.1	Tomato	cytosol	85.93	85.41
PGSC0003DMT400014419	Potato	cytosol	85.32	85.32
AT1G18080.1	Thale cress	cytosol	85.32	85.32
AT1G48630.1	Thale cress	cytosol	85.02	85.28
CDX92200	Canola	extracellular	84.4	84.92
CDX95784	Canola	cytosol	84.4	84.92
CDY18497	Canola	cytosol	84.4	84.66
Bra022282.1-P	Field mustard	cytosol	84.1	84.62
CDX95554	Canola	cytosol	84.1	84.36
AT3G18130.1	Thale cress	cytosol	84.1	84.36
CDY71917	Canola	cytosol	62.69	84.02
PGSC0003DMT400041253	Potato	cytosol	21.71	83.53
Bra032261.1-P	Field mustard	cytosol	83.18	83.18
Bra021294.1-P	Field mustard	cytosol	82.87	83.13
CDY59680	Canola	cytosol	57.19	83.11
CDY64888	Canola	cytosol	74.62	81.61
Bra018745.1-P	Field mustard	cytosol	74.31	81.54
CDX86074	Canola	cytosol	73.39	80.54
CDY44104	Canola	cytosol	73.39	80.54
CDX93686	Canola	cytosol	73.39	80.54
Zm00001d038923_P001	Maize	plastid	75.23	73.65
CDY52180	Canola	cytosol	36.39	73.46
Zm00001d009480_P001	Maize	plasma membrane, plastid	74.92	73.35
Os01t0686800-02	Rice	cytosol	74.62	73.05
EES18632	Sorghum	cytosol	74.01	72.46
EES01286	Sorghum	cytosol	72.78	71.69
TraesCS1B01G398800.1	Wheat	plastid	73.39	71.64
HORVU3Hr1G063670.2	Barley	cytosol	72.48	71.39
TraesCS3D01G264000.1	Wheat	cytosol	72.48	71.39
TraesCS3B01G297300.1	Wheat	nucleus	72.48	71.39
TraesCS1A01G378000.1	Wheat	cytosol, golgi, nucleus, unclear	73.09	71.34
TraesCS3A01G263900.1	Wheat	nucleus	72.17	71.08
TraesCS1D01G385000.1	Wheat	cytosol	72.48	70.75
Os05t0552300-02	Rice	cytosol	72.48	70.54
HORVU1Hr1G083710.1	Barley	cytosol	67.89	63.25
GSMUA_Achr2P14580_001	Banana	cytosol	56.27	58.97
Bra000607.1-P	Field mustard	cytosol	56.57	46.72
CDX77303	Canola	cytosol	29.05	30.74
CDX77299	Canola	plastid	6.73	22.68
CDY46056	Canola	cytosol, endoplasmic reticulum, plasma membrane	42.51	15.46
VIT_10s0003g04610.t01	Wine grape	nucleus	19.88	12.52

Protein Annotations

EntrezGene:100249027	wikigene:100249027	MapMan:17.1.3.1.33	Gene3D:2.130.10.10	UniProt:A5BV59	EMBL:AM472330
ProteinID:CAN61810	ProteinID:CAN61810.1	ProteinID:CCB43264	ProteinID:CCB43264.1	EMBL:FN594950	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EntrezGene:LOC100249027	wikigene:LOC100249027	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19868	PANTHER:PTHR19868:SF3	SMART:SM00320	SUPFAM:SSF50978	TIGR:TC54108
TIGR:TC54328	UniParc:UPI0001521BFE	ArrayExpress:VIT_17s0000g02750	EnsemblPlantsGene:VIT_17s0000g02750	EnsemblPlants:VIT_17s0000g02750.t01	unigene:Vvi.9308
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002281279
RefSeq:XP_002281279.1	RefSeq:XP_003634197	RefSeq:XP_003634197.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:+:2538338..2540895

Molecular Weight (calculated)

36044.7 Da

IEP (calculated)

7.808

GRAVY (calculated)

-0.177

Length

327 amino acids

Sequence
(BLAST)

001: MAETLVLRGT MRAHTDMVTA IATPIDNSDM IVTSSRDKSI ILWHLTKDDK TYGVPRRRLT GHSHFVQDVV LSSDGQFALS GSWDGELRLW DLAAGTSARR
101: FVGHTKDVLS VAFSVDNRQI VSASRDRTIK LWNTLGECKY TIQDADAHSD WVSCVRFSPN NLQPTIVSAS WDRTVKVWNL TNCKLRATLA GHGGYVNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKRLYS LDAGAIIHAL CFSPNRYWLC AATEQSIKIW DLESKSIVED LKVDLKTEAE KSEDTTTTAK KKGKIIYCTS
301: LSWSADGSTL FSGYTDGVVR VWGIGRY

Best Arabidopsis Sequence Match ( AT1G48630.1 )
(BLAST)

001: MAEGLVLKGT MCAHTDMVTA IATPVDNSDV IVTSSRDKSI ILWKLTKEDK SYGVAQRRMT GHSHFVQDVV LSSDGQFALS GSWDGELRLW DLATGESTRR
101: FVGHTKDVLS VAFSTDNRQI VSASRDRTIK LWNTLGECKY TISEADGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLRNTLA GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKAEAE KTDGSTGIGN KTKVIYCTSL
301: NWSADGNTLF SGYTDGVIRV WGIGRY

Arabidopsis Description

RACK1BRACK1B_AT [Source:UniProtKB/TrEMBL;Acc:A0A178W908]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.