Factsheet for Bra022282.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92200	Canola	extracellular	99.69	99.69
CDX95784	Canola	cytosol	99.38	99.38
Bra021294.1-P	Field mustard	cytosol	96.62	96.32
Bra016570.1-P	Field mustard	cytosol	88.31	87.77
Bra032261.1-P	Field mustard	cytosol	88.31	87.77
Bra025931.1-P	Field mustard	cytosol	88.0	87.2
Bra031014.1-P	Field mustard	cytosol	87.69	87.16
Bra018745.1-P	Field mustard	cytosol	79.38	86.58
KRH60497	Soybean	endoplasmic reticulum, nucleus	84.62	84.62
VIT_17s0000g02750.t01	Wine grape	cytosol, plastid	84.62	84.1
KRH41792	Soybean	nucleus	84.0	84.0
PGSC0003DMT400074094	Potato	cytosol	81.54	81.29
Solyc03g119040.2.1	Tomato	nucleus	81.23	80.98
Solyc06g069010.2.1	Tomato	nucleus	80.92	80.67
PGSC0003DMT400014419	Potato	cytosol	80.92	80.43
Solyc12g040510.1.1	Tomato	cytosol	79.08	78.12
PGSC0003DMT400040923	Potato	cytosol	79.08	78.12
PGSC0003DMT400041253	Potato	cytosol	20.31	77.65
Zm00001d038923_P001	Maize	plastid	72.62	70.66
Os01t0686800-02	Rice	cytosol	72.62	70.66
Zm00001d009480_P001	Maize	plasma membrane, plastid	72.31	70.36
EES18632	Sorghum	cytosol	71.38	69.46
TraesCS1B01G398800.1	Wheat	plastid	71.38	69.25
TraesCS1A01G378000.1	Wheat	cytosol, golgi, nucleus, unclear	71.08	68.96
HORVU3Hr1G063670.2	Barley	cytosol	69.85	68.37
TraesCS3D01G264000.1	Wheat	cytosol	69.85	68.37
TraesCS3B01G297300.1	Wheat	nucleus	69.85	68.37
TraesCS1D01G385000.1	Wheat	cytosol	70.46	68.36
Os05t0552300-02	Rice	cytosol	70.46	68.15
TraesCS3A01G263900.1	Wheat	nucleus	69.54	68.07
EES01286	Sorghum	cytosol	69.54	68.07
HORVU1Hr1G083710.1	Barley	cytosol	67.38	62.39
GSMUA_Achr2P14580_001	Banana	cytosol	56.0	58.33
Bra000607.1-P	Field mustard	cytosol	62.15	51.01
Bra014236.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	8.0	13.33
Bra029576.1-P	Field mustard	nucleus	15.38	10.29
Bra000814.1-P	Field mustard	nucleus	15.38	10.2

Protein Annotations

MapMan:17.1.3.1.33	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra022282	EnsemblPlants:Bra022282.1	EnsemblPlants:Bra022282.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4E0I5	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19868	PANTHER:PTHR19868:SF3	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002547370	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

AT3G18130 (E=2e-178) RACK1C_AT | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C); nucleotide binding

Coordinates

chrA05:+:18653455..18654663

Molecular Weight (calculated)

35466.0 Da

IEP (calculated)

7.793

GRAVY (calculated)

-0.152

Length

325 amino acids

Sequence
(BLAST)

001: MAEGLVLKGT MRAHTDMVTA IATPIDNSDI IVTSSRDKSI ILWKLTKDDK SYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWAGELRLW DLATGVSTRR
101: FVGHTKDVLS VAFSVDNRQI VSASRDRTIK LWNTLGECKY TISEADGHKD WISCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLKSSLA GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEGGSIIHSL CFSPNRYWLC AATESSIKIW DLESKTVVDE LKVDLKAEAE KDGGAGTGNQ KKVNYCTSLN
301: WSADGSTLFS GYTDGVVRVW GIGRY

Best Arabidopsis Sequence Match ( AT3G18130.1 )
(BLAST)

001: MAEGLVLKGI MRAHTDIVTA IATPIDNSDI IVTASRDKSI ILWKLTKDDK SYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLATGETTRR
101: FVGHTKDVLS VAFSTDNRQI VSASRDRTIK LWNTLGECKY TISEGDGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLRNSLV GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKSEAE KNEGGVGTGN QKKVIYCTSL
301: NWSADGSTLF SGYTDGVVRV WGIGRY

Arabidopsis Description

RACK1CReceptor for activated C kinase 1C [Source:UniProtKB/Swiss-Prot;Acc:Q9LV28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.