Factsheet for TraesCS1A01G378000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, nucleus, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
unclear: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G247900.2
TraesCS7B01G143600.3
TraesCS7D01G246700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48630.1	TraesCS7A01G247900.2	AT4G35470.1	21798944
AT1G48630.1	TraesCS7B01G143600.3	AT4G35470.1	21798944
AT1G48630.1	TraesCS7D01G246700.1	AT4G35470.1	21798944
AT3G18130.1	TraesCS7A01G247900.2	AT4G35470.1	21798944
AT3G18130.1	TraesCS7B01G143600.3	AT4G35470.1	21798944
AT3G18130.1	TraesCS7D01G246700.1	AT4G35470.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G385000.1	Wheat	cytosol	98.51	98.51
TraesCS1B01G398800.1	Wheat	plastid	96.72	96.72
Zm00001d009480_P001	Maize	plasma membrane, plastid	86.57	86.83
Zm00001d038923_P001	Maize	plastid	85.97	86.23
HORVU1Hr1G083710.1	Barley	cytosol	88.36	84.33
EES18632	Sorghum	cytosol	83.28	83.53
TraesCS3A01G263900.1	Wheat	nucleus	80.9	81.63
GSMUA_Achr1P11860_001	Banana	cytosol	64.48	79.12
GSMUA_Achr1P05500_001	Banana	cytosol	64.18	79.04
GSMUA_Achr5P10020_001	Banana	cytosol	71.04	78.81
Os05t0552300-02	Rice	cytosol	78.81	78.57
PGSC0003DMT400074094	Potato	cytosol	72.24	74.23
Solyc06g069010.2.1	Tomato	nucleus	71.94	73.93
Solyc03g119040.2.1	Tomato	nucleus	71.64	73.62
Bra025931.1-P	Field mustard	cytosol	71.94	73.48
Bra031014.1-P	Field mustard	cytosol	71.64	73.39
PGSC0003DMT400014419	Potato	cytosol	71.34	73.09
VIT_17s0000g02750.t01	Wine grape	cytosol, plastid	71.34	73.09
KRH60497	Soybean	endoplasmic reticulum, nucleus	70.75	72.92
Bra016570.1-P	Field mustard	cytosol	71.04	72.78
KRH41792	Soybean	nucleus	70.15	72.31
AT1G18080.1	Thale cress	cytosol	70.45	72.17
AT1G48630.1	Thale cress	cytosol	69.55	71.47
Solyc12g040510.1.1	Tomato	cytosol	70.15	71.43
PGSC0003DMT400040923	Potato	cytosol	70.15	71.43
CDX92200	Canola	extracellular	69.25	71.38
CDX95784	Canola	cytosol	69.25	71.38
CDY64888	Canola	cytosol	63.58	71.24
CDY26186	Canola	cytosol	53.13	71.2
AT3G18130.1	Thale cress	cytosol	69.25	71.17
CDX95554	Canola	cytosol	69.25	71.17
CDY18497	Canola	cytosol	69.25	71.17
Bra018745.1-P	Field mustard	cytosol	63.28	71.14
Bra022282.1-P	Field mustard	cytosol	68.96	71.08
CDY21720	Canola	cytosol	52.84	70.8
CDY60778	Canola	cytosol, plastid	52.84	70.8
CDX81860	Canola	cytosol	52.84	70.8
CDY44104	Canola	cytosol	62.69	70.47
CDX86074	Canola	cytosol	62.69	70.47
CDX93686	Canola	cytosol	62.69	70.47
CDX83869	Canola	cytosol	52.54	70.4
CDX96736	Canola	cytosol	52.54	70.4
Bra032261.1-P	Field mustard	cytosol	68.66	70.34
Bra021294.1-P	Field mustard	cytosol	67.76	69.63
PGSC0003DMT400041253	Potato	cytosol	17.61	69.41
CDY59680	Canola	cytosol	46.57	69.33
CDY71917	Canola	cytosol	50.45	69.26
CDY52180	Canola	cytosol	31.04	64.2
KRH48610	Soybean	cytosol	53.73	52.94
Bra000607.1-P	Field mustard	cytosol	47.16	39.9
CDX77303	Canola	cytosol	25.37	27.51
CDX77299	Canola	plastid	6.57	22.68
CDY46056	Canola	cytosol, endoplasmic reticulum, plasma membrane	39.7	14.79
TraesCS5A01G043100.1	Wheat	plastid	17.01	10.96

Protein Annotations

MapMan:17.1.3.1.33	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19868	PANTHER:PTHR19868:SF3	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:TraesCS1A01G378000	EnsemblPlants:TraesCS1A01G378000.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	TIGR:cd00200	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1A:-:550969849..550972162

Molecular Weight (calculated)

36283.8 Da

IEP (calculated)

6.503

GRAVY (calculated)

-0.116

Length

335 amino acids

Sequence
(BLAST)

001: MANMQESLGL VGTMRGHNDV VTAIAAPIDN SPYIVSGSRD KSLLVWDLTN PVQSLGDGTV GTDYAVPFRR LTGHGHFVQD VVISSDGQFA LSGSWDGELR
101: LWDLSTGLTT RRFVGHSKDV ISVAFSVDNR QIVSASRDNT IKLWNTLGEC KYTIGGDMGG GEGHTGWVSC VRFSPNIQQP TIVSGSWDKT VKVWNLTNCK
201: LRSTLAGHGG YVNAVAVSPD GSLCASGGKD GVTLLWDLSE GKRLYQLEAG SIIHALCFSP NRYWLCAATE ESVKIWDLES KHVVQDLKPE VQVSKNQMLY
301: CTSLSWSADG STLYTGYTDG TIRVFKIQAG FAGYA

Best Arabidopsis Sequence Match ( AT1G18080.1 )
(BLAST)

001: MAEGLVLKGT MRAHTDMVTA IATPIDNADI IVSASRDKSI ILWKLTKDDK AYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLAAGVSTRR
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TISEGGEGHR DWVSCVRFSP NTLQPTIVSA SWDKTVKVWN LSNCKLRSTL AGHTGYVSTV
201: AVSPDGSLCA SGGKDGVVLL WDLAEGKKLY SLEANSVIHA LCFSPNRYWL CAATEHGIKI WDLESKSIVE DLKVDLKAEA EKADNSGPAA TKRKVIYCTS
301: LNWSADGSTL FSGYTDGVIR VWGIGRY

Arabidopsis Description

RACK1ARACK1A_AT [Source:UniProtKB/TrEMBL;Acc:A0A178WHX3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.