Factsheet for PGSC0003DMT400074094

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400035497
PGSC0003DMT400051923
PGSC0003DMT400059678

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48630.1	PGSC0003DMT400035497	AT4G35470.1	21798944
AT1G48630.1	PGSC0003DMT400059678	AT4G35470.1	21798944
AT1G48630.1	PGSC0003DMT400051923	AT5G43960.1	21798944
AT3G18130.1	PGSC0003DMT400035497	AT4G35470.1	21798944
AT3G18130.1	PGSC0003DMT400059678	AT4G35470.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g069010.2.1	Tomato	nucleus	99.08	99.08
PGSC0003DMT400041253	Potato	cytosol	23.93	91.76
PGSC0003DMT400014419	Potato	cytosol	91.72	91.44
PGSC0003DMT400040923	Potato	cytosol	90.49	89.67
VIT_17s0000g02750.t01	Wine grape	cytosol, plastid	85.89	85.63
KRH60497	Soybean	endoplasmic reticulum, nucleus	84.36	84.62
KRH41792	Soybean	nucleus	83.74	84.0
CDY71917	Canola	cytosol	61.96	82.79
CDY26186	Canola	cytosol	62.88	82.0
CDX92200	Canola	extracellular	81.6	81.85
Bra031014.1-P	Field mustard	cytosol	81.9	81.65
CDY60778	Canola	cytosol, plastid	62.58	81.6
CDY21720	Canola	cytosol	62.58	81.6
CDX96736	Canola	cytosol	62.58	81.6
CDY18497	Canola	cytosol	81.6	81.6
Bra022282.1-P	Field mustard	cytosol	81.29	81.54
CDX95784	Canola	cytosol	81.29	81.54
Bra025931.1-P	Field mustard	cytosol	81.9	81.4
CDX95554	Canola	cytosol	81.29	81.29
CDX83869	Canola	cytosol	62.27	81.2
CDX81860	Canola	cytosol	62.27	81.2
Bra016570.1-P	Field mustard	cytosol	81.29	81.04
AT3G18130.1	Thale cress	cytosol	80.98	80.98
AT1G48630.1	Thale cress	cytosol	80.98	80.98
CDY59680	Canola	cytosol	55.83	80.89
Bra032261.1-P	Field mustard	cytosol	80.98	80.73
AT1G18080.1	Thale cress	cytosol	80.67	80.43
Bra021294.1-P	Field mustard	cytosol	80.06	80.06
Bra018745.1-P	Field mustard	cytosol	72.09	78.86
CDY64888	Canola	cytosol	72.09	78.6
CDY44104	Canola	cytosol	71.17	77.85
CDX93686	Canola	cytosol	71.17	77.85
CDX86074	Canola	cytosol	71.17	77.85
Zm00001d038923_P001	Maize	plastid	76.07	74.25
Zm00001d009480_P001	Maize	plasma membrane, plastid	75.77	73.95
Os01t0686800-02	Rice	cytosol	75.46	73.65
EES18632	Sorghum	cytosol	74.85	73.05
TraesCS1B01G398800.1	Wheat	plastid	74.54	72.54
HORVU3Hr1G063670.2	Barley	cytosol	73.62	72.29
TraesCS3B01G297300.1	Wheat	nucleus	73.62	72.29
TraesCS3D01G264000.1	Wheat	cytosol	73.62	72.29
TraesCS1A01G378000.1	Wheat	cytosol, golgi, nucleus, unclear	74.23	72.24
TraesCS3A01G263900.1	Wheat	nucleus	73.31	71.99
TraesCS1D01G385000.1	Wheat	cytosol	73.62	71.64
EES01286	Sorghum	cytosol	72.39	71.08
CDY52180	Canola	cytosol	35.28	70.99
Os05t0552300-02	Rice	cytosol	72.39	70.24
HORVU1Hr1G083710.1	Barley	cytosol	69.33	64.39
GSMUA_Achr2P14580_001	Banana	cytosol	54.6	57.05
Bra000607.1-P	Field mustard	cytosol	53.99	44.44
CDX77303	Canola	cytosol	29.14	30.74
CDX77299	Canola	plastid	6.75	22.68
CDY46056	Canola	cytosol, endoplasmic reticulum, plasma membrane	40.8	14.79
PGSC0003DMT400054611	Potato	nucleus	19.02	12.02

Protein Annotations

EntrezGene:102585360	MapMan:17.1.3.1.33	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1CT47	PFAM:PF00400
EnsemblPlantsGene:PGSC0003DMG400028795	PGSC:PGSC0003DMG400028795	EnsemblPlants:PGSC0003DMT400074094	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19868	PANTHER:PTHR19868:SF3	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002961238
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006365404.1
SEG:seg	:	:	:	:	:

Description

LeArcA1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028795]

Coordinates

chr6:+:50715735..50718432

Molecular Weight (calculated)

35977.5 Da

IEP (calculated)

7.190

GRAVY (calculated)

-0.153

Length

326 amino acids

Sequence
(BLAST)

001: MSQESLVLRG TMKAHTDWVT AIATPIDNSD MIVTSSRDKS IIVWSLTKDG SHYGVPRRRL TGHGHFVEDV VLSSDGMFAL SGSWDGELRL WDLQAGTTAR
101: RFVGHTKDVL SVAFSVDNRQ IVSASRDRTI KLWNTLGECK YTIQEQDSHS DWVSCVRFSP NNLQPTIVSG SWDRTVKIWN LTNCKLRSTL AGHSGYVNTV
201: AVSPDGSLCA SGGKDGVILL WDLAEGKKLY SLDAGSIIHT LCFSPNRYWL CAATESSIKI WDLESKSVVV DLKVDLKQES EMFGTAATDS KTKVIYCTSL
301: SWSADGSTLF SGYTDGLIRV WGIGRY

Best Arabidopsis Sequence Match ( AT1G48630.1 )
(BLAST)

001: MAEGLVLKGT MCAHTDMVTA IATPVDNSDV IVTSSRDKSI ILWKLTKEDK SYGVAQRRMT GHSHFVQDVV LSSDGQFALS GSWDGELRLW DLATGESTRR
101: FVGHTKDVLS VAFSTDNRQI VSASRDRTIK LWNTLGECKY TISEADGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLRNTLA GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKAEAE KTDGSTGIGN KTKVIYCTSL
301: NWSADGNTLF SGYTDGVIRV WGIGRY

Arabidopsis Description

RACK1BRACK1B_AT [Source:UniProtKB/TrEMBL;Acc:A0A178W908]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.