Factsheet for PGSC0003DMT400054611

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g069770.2.1	Tomato	nucleus	98.06	98.06
KRH11768	Soybean	cytosol, mitochondrion, nucleus	33.53	67.32
VIT_10s0003g04610.t01	Wine grape	nucleus	64.34	63.97
KRH36772	Soybean	nucleus	58.53	60.89
CDY39169	Canola	cytosol, nucleus, plastid	41.28	57.26
GSMUA_Achr8P02970_001	Banana	nucleus	55.43	56.52
Os03t0625900-01	Rice	nucleus	55.04	55.58
GSMUA_Achr10P...	Banana	nucleus	55.04	54.41
HORVU5Hr1G010440.3	Barley	cytosol, nucleus	49.22	54.39
CDY62001	Canola	nucleus	50.97	54.23
CDY21330	Canola	nucleus	50.58	53.93
Bra000814.1-P	Field mustard	nucleus	50.78	53.47
Zm00001d033244_P001	Maize	cytosol, nucleus, plastid	52.52	53.14
EER91177	Sorghum	cytosol, nucleus, plastid	52.52	52.93
Zm00001d013697_P002	Maize	plasma membrane	52.33	52.73
TraesCS5A01G043100.1	Wheat	plastid	52.71	52.31
AT4G05410.1	Thale cress	nucleus	50.97	52.18
TraesCS5D01G051600.1	Wheat	nucleus	52.13	51.93
AT4G21130.1	Thale cress	nucleus	47.29	50.94
Bra029576.1-P	Field mustard	nucleus	47.29	50.21
CDY28878	Canola	nucleus	21.32	36.42
CDY45049	Canola	endoplasmic reticulum, mitochondrion, nucleus, plastid	13.18	34.87
Bra014236.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	12.98	34.36
PGSC0003DMT400041253	Potato	cytosol	4.65	28.24
PGSC0003DMT400040923	Potato	cytosol	12.4	19.45
PGSC0003DMT400074094	Potato	cytosol	12.02	19.02
PGSC0003DMT400014419	Potato	cytosol	11.82	18.65

Protein Annotations

EntrezGene:102604084	MapMan:17.1.3.2.1.9	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006364
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0034511	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:M1BWL8	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG402021193	PGSC:PGSC0003DMG402021193	EnsemblPlants:PGSC0003DMT400054611
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19865	PANTHER:PTHR19865:SF0
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00029571D9	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006353025.1	SEG:seg	:	:

Description

U3 small nucleolar RNA-interacting protein [Source:PGSC_GENE;Acc:PGSC0003DMG402021193]

Coordinates

chr2:+:28901298..28909906

Molecular Weight (calculated)

58048.6 Da

IEP (calculated)

6.648

GRAVY (calculated)

-0.792

Length

516 amino acids

Sequence
(BLAST)

001: MKNLKKKKAS AQNTQKGSKK RFSVESDPFF NEDNDLKRRK RFGDDEDIES SDDSEDIYGS DDEGVDRNER KDEEEEEEEE TAAEKRKRLA ETFLHSMRES
101: KRKEEEERES GEEYDREERE AMRDSWMVDM LQKEQMEGSG RSRKAIASRI QKPTEGFHLL VKHRQSVTAV TLSDDDLKGF SSSKDGTIVS WDVDSGKTEK
201: YAWPTDEALK SHGAKEPQGR ATKHSKHVLA LAVSSDGRYL ASGGLDRHIH LWDVRTRQHI KAFPGHKGPV SCLTFRQGSS ELFSGSFDRS IKIWNVEDRA
301: YVNTLFGHQS EVLTIDSLRK ERVLTVGRDR TMHLWKVPEE SQLIFRAPAT SLECCCFINN DEFLSGSDDG SIEHWNVTRK KPVHIVKNAH ASLQSVGIEQ
401: SNGALSNGHM ENGTLNPQCH SSSALSWVSA LTVCRNSDLA ASGAGNGSVQ LWTIENESKG IRPLFELPVA GFINSLVFSK SGQFLVAAVG QEPRLGRWGR
501: IADVRNGVFV HPLKHS

Best Arabidopsis Sequence Match ( AT4G05410.1 )
(BLAST)

001: MKYNNEKKKG GSFKRGGKKG SNERDPFFEE EPKKRRKVSY DDDDIESVDS DAEENGFTGG DEDGRRVDGE VEDEDEFADE TAGEKRKRLA EEMLNRRREA
101: MRREREEADN DDDDDEDDDE TIKKSLMQKQ QEDSGRIRRL IASRVQEPLS TDGFSVIVKH RRSVVSVALS DDDSRGFSAS KDGTIMHWDV SSGKTDKYIW
201: PSDEILKSHG MKLREPRNKN HSRESLALAV SSDGRYLATG GVDRHVHIWD VRTREHVQAF PGHRNTVSCL CFRYGTSELY SGSFDRTVKV WNVEDKAFIT
301: ENHGHQGEIL AIDALRKERA LTVGRDRTML YHKVPESTRM IYRAPASSLE SCCFISDNEY LSGSDNGTVA LWGMLKKKPV FVFKNAHQDI PDGITTNGIL
401: ENGDHEPVNN NCSANSWVNA VATSRGSDLA ASGAGNGFVR LWAVETNAIR PLYELPLTGF VNSLAFAKSG KFLIAGVGQE TRFGRWGCLK SAQNGVAIHP
501: LRLA

Arabidopsis Description

YAOU3 snoRNP-associated protein-like YAO [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.