Factsheet for Os03t0625900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 18203134
nucleus: 23777608

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91177	Sorghum	cytosol, nucleus, plastid	80.43	80.27
Zm00001d033244_P001	Maize	cytosol, nucleus, plastid	80.04	80.2
Zm00001d013697_P002	Maize	plasma membrane	78.08	77.93
HORVU5Hr1G010440.3	Barley	cytosol, nucleus	66.14	72.38
TraesCS5A01G043100.1	Wheat	plastid	71.23	70.0
TraesCS5D01G051600.1	Wheat	nucleus	70.25	69.31
GSMUA_Achr8P02970_001	Banana	nucleus	58.71	59.29
KRH11768	Soybean	cytosol, mitochondrion, nucleus	29.55	58.75
GSMUA_Achr10P...	Banana	nucleus	58.9	57.66
PGSC0003DMT400054611	Potato	nucleus	55.58	55.04
CDY39169	Canola	cytosol, nucleus, plastid	39.73	54.57
Solyc02g069770.2.1	Tomato	nucleus	54.99	54.46
VIT_10s0003g04610.t01	Wine grape	nucleus	54.99	54.14
KRH36772	Soybean	nucleus	51.47	53.02
Bra000814.1-P	Field mustard	nucleus	47.55	49.59
CDY21330	Canola	nucleus	46.97	49.59
CDY62001	Canola	nucleus	46.97	49.48
Bra029576.1-P	Field mustard	nucleus	45.21	47.53
AT4G05410.1	Thale cress	nucleus	46.77	47.42
AT4G21130.1	Thale cress	nucleus	43.05	45.93
CDY28878	Canola	nucleus	20.94	35.43
Bra014236.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	12.13	31.79
CDY45049	Canola	endoplasmic reticulum, mitochondrion, nucleus, plastid	11.35	29.74
Os01t0686800-02	Rice	cytosol	10.96	16.77
Os05t0552300-02	Rice	cytosol	10.96	16.67

Protein Annotations

MapMan:17.1.3.2.1.9	Gene3D:2.130.10.10	EntrezGene:4333495	ProteinID:AAR01650.1	ProteinID:ABF97710.1	EMBL:AK101109
ProteinID:BAF12612.1	ProteinID:BAS85340.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006364	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0030515	GO:GO:0032040	GO:GO:0034511	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlantsGene:Os03g0625900	EnsemblPlants:Os03t0625900-01	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19865	PANTHER:PTHR19865:SF0	UniProt:Q75LV5	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI00001D8EB1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_015628144.1	SEG:seg	:	:	:	:

Description

OsWD40-78WD40 repeat-like domain containing protein. (Os03t0625900-01)

Coordinates

chr3:-:23817641..23824212

Molecular Weight (calculated)

57031.0 Da

IEP (calculated)

6.414

GRAVY (calculated)

-0.699

Length

511 amino acids

Sequence
(BLAST)

001: MAPRPRKRVS RPKPRATSRG RGGGDEDPFF ESEPKRRRGG GRDEDIESED SDLEGVAAAA AGGVGDDGEE EEEEEEEQET AGEKKMRIAK ELLKKVTDAA
101: RRRREDDEDE DEGEEAGRRR VADILLKRQF EESGRKRMEL ADRILQPDPE DGFKMLVKHR QPVTAVVLSK DSDKGFSASK DGVIVHWDVE TGKSEKYLWP
201: SENVLVSHHA KPPLSAKRSK QVLALAVSAD GRYLASGGLD RHIHLWDVRS REHIQAFSGH RGAISCLSFG PDSSELFSGS FDRKIMQWNA EDRTYMNCLF
301: GHQNEVLTMD ALSKDRLLTV ARDRTMHLWK IPEESQLLFR APATASLECC CFIDDKEFLT GSDDGSVELW SIMRKKPTHI IRNAHPVFRN NLNSLENNVE
401: ENGIHKPESV SSAQSWVSAI AARRGSDLAA SGAANGSVRL WAIEPDSKGI RPLFSLRLDG FVNSLAIPKS GRFIVAGVGQ EPRLGRWGRV RSAQNGVVIH
501: PIRLKEESED L

Best Arabidopsis Sequence Match ( AT4G05410.1 )
(BLAST)

001: MKYNNEKKKG GSFKRGGKKG SNERDPFFEE EPKKRRKVSY DDDDIESVDS DAEENGFTGG DEDGRRVDGE VEDEDEFADE TAGEKRKRLA EEMLNRRREA
101: MRREREEADN DDDDDEDDDE TIKKSLMQKQ QEDSGRIRRL IASRVQEPLS TDGFSVIVKH RRSVVSVALS DDDSRGFSAS KDGTIMHWDV SSGKTDKYIW
201: PSDEILKSHG MKLREPRNKN HSRESLALAV SSDGRYLATG GVDRHVHIWD VRTREHVQAF PGHRNTVSCL CFRYGTSELY SGSFDRTVKV WNVEDKAFIT
301: ENHGHQGEIL AIDALRKERA LTVGRDRTML YHKVPESTRM IYRAPASSLE SCCFISDNEY LSGSDNGTVA LWGMLKKKPV FVFKNAHQDI PDGITTNGIL
401: ENGDHEPVNN NCSANSWVNA VATSRGSDLA ASGAGNGFVR LWAVETNAIR PLYELPLTGF VNSLAFAKSG KFLIAGVGQE TRFGRWGCLK SAQNGVAIHP
501: LRLA

Arabidopsis Description

YAOU3 snoRNP-associated protein-like YAO [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.