CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36772	Soybean	nucleus	95.33	49.4
VIT_10s0003g04610.t01	Wine grape	nucleus	73.93	36.61
CDY39169	Canola	cytosol, nucleus, plastid	50.58	34.95
Solyc02g069770.2.1	Tomato	nucleus	67.32	33.53
PGSC0003DMT400054611	Potato	nucleus	67.32	33.53
HORVU5Hr1G010440.3	Barley	cytosol, nucleus	60.31	33.19
GSMUA_Achr10P...	Banana	nucleus	66.15	32.57
GSMUA_Achr8P02970_001	Banana	nucleus	63.81	32.41
Zm00001d033244_P001	Maize	cytosol, nucleus, plastid	60.31	30.39
EER91177	Sorghum	cytosol, nucleus, plastid	59.92	30.08
Zm00001d013697_P002	Maize	plasma membrane	59.53	29.88
TraesCS5A01G043100.1	Wheat	plastid	60.31	29.81
Os03t0625900-01	Rice	nucleus	58.75	29.55
TraesCS5D01G051600.1	Wheat	nucleus	59.53	29.54
CDY45049	Canola	endoplasmic reticulum, mitochondrion, nucleus, plastid	21.79	28.72
Bra014236.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	21.79	28.72
CDY21330	Canola	nucleus	53.7	28.51
AT4G21130.1	Thale cress	nucleus	52.92	28.39
CDY62001	Canola	nucleus	53.31	28.25
Bra000814.1-P	Field mustard	nucleus	52.53	27.55
AT4G05410.1	Thale cress	nucleus	53.31	27.18
Bra029576.1-P	Field mustard	nucleus	49.03	25.93
CDY28878	Canola	nucleus	29.96	25.5
KRH48610	Soybean	cytosol	14.79	11.18
KRH60497	Soybean	endoplasmic reticulum, nucleus	14.01	11.08
KRH41792	Soybean	nucleus	14.01	11.08

Protein Annotations

MapMan:17.1.3.2.1.9	Gene3D:2.130.10.10	UniProt:A0A0R0G8Q5	EMBL:ACUP02009236	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_15G1291001
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0034511	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH11768	ProteinID:KRH11768	ProteinID:KRH11768.1	PFAM:PF00400
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19865	PANTHER:PTHR19865:SF0
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0006EE1243	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:10316470..10319867

Molecular Weight (calculated)

28611.9 Da

IEP (calculated)

6.859

GRAVY (calculated)

-0.304

Length

257 amino acids

Sequence
(BLAST)

001: AFPGHRGPVS CLTFRQGTSE LFSGSFDRTI KIWNVEDRTY MSTLFGHQSE ILSIDCLRKE RVLTAGRDRS MQLFKVHEES RLVFRAPASS LECCCFVSND
101: ELLSGSDDGS IELWTVMRKK PIYILRNAHA LLVDSMKSDQ KDSEKLPNGN LENGYNHPEN HHCLSVFSWV SAVSVCRNSD LAASGAGNGS VRLWEIESDT
201: KDIKSLYNVP LAGFVNSLAF AKSGEFLVAG VGQEPRLGRW GRNPEARNGV SILTYEM

Best Arabidopsis Sequence Match ( AT4G05410.1 )
(BLAST)

001: MKYNNEKKKG GSFKRGGKKG SNERDPFFEE EPKKRRKVSY DDDDIESVDS DAEENGFTGG DEDGRRVDGE VEDEDEFADE TAGEKRKRLA EEMLNRRREA
101: MRREREEADN DDDDDEDDDE TIKKSLMQKQ QEDSGRIRRL IASRVQEPLS TDGFSVIVKH RRSVVSVALS DDDSRGFSAS KDGTIMHWDV SSGKTDKYIW
201: PSDEILKSHG MKLREPRNKN HSRESLALAV SSDGRYLATG GVDRHVHIWD VRTREHVQAF PGHRNTVSCL CFRYGTSELY SGSFDRTVKV WNVEDKAFIT
301: ENHGHQGEIL AIDALRKERA LTVGRDRTML YHKVPESTRM IYRAPASSLE SCCFISDNEY LSGSDNGTVA LWGMLKKKPV FVFKNAHQDI PDGITTNGIL
401: ENGDHEPVNN NCSANSWVNA VATSRGSDLA ASGAGNGFVR LWAVETNAIR PLYELPLTGF VNSLAFAKSG KFLIAGVGQE TRFGRWGCLK SAQNGVAIHP
501: LRLA

Arabidopsis Description

YAOU3 snoRNP-associated protein-like YAO [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.