Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 1
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
nucleus: 27291164 endoplasmic reticulum: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH60497 | Soybean | endoplasmic reticulum, nucleus | 98.15 | 98.15 |
| VIT_17s0000g02750.t01 | Wine grape | cytosol, plastid | 92.0 | 91.44 |
| CDX83869 | Canola | cytosol | 67.08 | 87.2 |
| CDY26186 | Canola | cytosol | 66.46 | 86.4 |
| CDX96736 | Canola | cytosol | 66.46 | 86.4 |
| CDY60778 | Canola | cytosol, plastid | 66.15 | 86.0 |
| Bra016570.1-P | Field mustard | cytosol | 86.15 | 85.63 |
| CDX81860 | Canola | cytosol | 65.85 | 85.6 |
| AT1G48630.1 | Thale cress | cytosol | 85.85 | 85.58 |
| AT3G18130.1 | Thale cress | cytosol | 85.85 | 85.58 |
| Solyc03g119040.2.1 | Tomato | nucleus | 85.85 | 85.58 |
| Bra025931.1-P | Field mustard | cytosol | 86.15 | 85.37 |
| AT1G18080.1 | Thale cress | cytosol | 85.54 | 85.02 |
| Bra031014.1-P | Field mustard | cytosol | 85.54 | 85.02 |
| CDY71917 | Canola | cytosol | 63.69 | 84.84 |
| CDY21720 | Canola | cytosol | 65.23 | 84.8 |
| PGSC0003DMT400014419 | Potato | cytosol | 84.92 | 84.4 |
| CDX92200 | Canola | extracellular | 84.31 | 84.31 |
| CDX95784 | Canola | cytosol | 84.31 | 84.31 |
| CDY18497 | Canola | cytosol | 84.31 | 84.05 |
| Bra022282.1-P | Field mustard | cytosol | 84.0 | 84.0 |
| PGSC0003DMT400074094 | Potato | cytosol | 84.0 | 83.74 |
| CDX95554 | Canola | cytosol | 84.0 | 83.74 |
| Solyc06g069010.2.1 | Tomato | nucleus | 84.0 | 83.74 |
| CDY59680 | Canola | cytosol | 57.85 | 83.56 |
| PGSC0003DMT400040923 | Potato | cytosol | 84.31 | 83.28 |
| Solyc12g040510.1.1 | Tomato | cytosol | 84.31 | 83.28 |
| Bra032261.1-P | Field mustard | cytosol | 83.38 | 82.87 |
| Bra021294.1-P | Field mustard | cytosol | 82.77 | 82.52 |
| PGSC0003DMT400041253 | Potato | cytosol | 21.23 | 81.18 |
| CDY64888 | Canola | cytosol | 74.46 | 80.94 |
| Bra018745.1-P | Field mustard | cytosol | 73.85 | 80.54 |
| CDX86074 | Canola | cytosol | 72.92 | 79.53 |
| CDX93686 | Canola | cytosol | 72.92 | 79.53 |
| CDY44104 | Canola | cytosol | 72.92 | 79.53 |
| CDY52180 | Canola | cytosol | 36.62 | 73.46 |
| Os01t0686800-02 | Rice | cytosol | 74.46 | 72.46 |
| Zm00001d038923_P001 | Maize | plastid | 74.15 | 72.16 |
| Zm00001d009480_P001 | Maize | plasma membrane, plastid | 73.85 | 71.86 |
| EES18632 | Sorghum | cytosol | 73.54 | 71.56 |
| TraesCS3D01G264000.1 | Wheat | cytosol | 72.0 | 70.48 |
| TraesCS3B01G297300.1 | Wheat | nucleus | 72.0 | 70.48 |
| HORVU3Hr1G063670.2 | Barley | cytosol | 72.0 | 70.48 |
| TraesCS1B01G398800.1 | Wheat | plastid | 72.62 | 70.45 |
| EES01286 | Sorghum | cytosol | 71.69 | 70.18 |
| TraesCS3A01G263900.1 | Wheat | nucleus | 71.69 | 70.18 |
| TraesCS1A01G378000.1 | Wheat | cytosol, golgi, nucleus, unclear | 72.31 | 70.15 |
| TraesCS1D01G385000.1 | Wheat | cytosol | 71.69 | 69.55 |
| Os05t0552300-02 | Rice | cytosol | 70.77 | 68.45 |
| HORVU1Hr1G083710.1 | Barley | cytosol | 68.0 | 62.96 |
| GSMUA_Achr2P14580_001 | Banana | cytosol | 55.38 | 57.69 |
| KRH48610 | Soybean | cytosol | 58.15 | 55.59 |
| Bra000607.1-P | Field mustard | cytosol | 56.31 | 46.21 |
| CDX77303 | Canola | cytosol | 29.23 | 30.74 |
| CDX77299 | Canola | plastid | 6.77 | 22.68 |
| CDY46056 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 43.08 | 15.57 |
| KRH11768 | Soybean | cytosol, mitochondrion, nucleus | 11.08 | 14.01 |
| KRH36772 | Soybean | nucleus | 18.77 | 12.3 |
Protein Annotations
| EntrezGene:100778205 | MapMan:17.1.3.1.33 | Gene3D:2.130.10.10 | EMBL:ACUP02004781 | EMBL:BT097778 | UniProt:C6TJD3 |
| InterPro:G-protein_beta_WD-40_rep | EnsemblPlantsGene:GLYMA_08G051600 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | EnsemblPlants:KRH41792 | ProteinID:KRH41792 | ProteinID:KRH41792.1 | PFAM:PF00400 |
| PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19868 | PANTHER:PTHR19868:SF3 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0001B16667 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : | : | : |
Description
hypothetical protein
Coordinates
chr8:+:4012647..4014718
Molecular Weight (calculated)
35750.2 Da
IEP (calculated)
7.808
GRAVY (calculated)
-0.188
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MADNLVLRGT MRAHTDVVTA IATPIDNSDM IVTASRDKSI ILWHLTKEDK TYGVPRRRLT GHSHFVQDVV LSSDGQFALS GSWDGELRLW DLAAGTSARR
101: FVGHTKDVLS VAFSIDNRQI VSASRDRTIK LWNTLGECKY TIQDGDAHSD WVSCVRFSPS TLQPTIVSAS WDRTVKVWNL TNCKLRNTLA GHNGYVNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKRLYS LDAGSIIHAL CFSPNRYWLC AATEQSIKIW DLESKSIVED LKVDLKTEAD ATTGGGNPNK KKVIYCTSLN
301: WSSDGSTLFS GYTDGVVRVW GIGRY
101: FVGHTKDVLS VAFSIDNRQI VSASRDRTIK LWNTLGECKY TIQDGDAHSD WVSCVRFSPS TLQPTIVSAS WDRTVKVWNL TNCKLRNTLA GHNGYVNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKRLYS LDAGSIIHAL CFSPNRYWLC AATEQSIKIW DLESKSIVED LKVDLKTEAD ATTGGGNPNK KKVIYCTSLN
301: WSSDGSTLFS GYTDGVVRVW GIGRY
001: MAEGLVLKGI MRAHTDIVTA IATPIDNSDI IVTASRDKSI ILWKLTKDDK SYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLATGETTRR
101: FVGHTKDVLS VAFSTDNRQI VSASRDRTIK LWNTLGECKY TISEGDGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLRNSLV GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKSEAE KNEGGVGTGN QKKVIYCTSL
301: NWSADGSTLF SGYTDGVVRV WGIGRY
101: FVGHTKDVLS VAFSTDNRQI VSASRDRTIK LWNTLGECKY TISEGDGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLRNSLV GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKSEAE KNEGGVGTGN QKKVIYCTSL
301: NWSADGSTLF SGYTDGVVRV WGIGRY
Arabidopsis Description
RACK1CReceptor for activated C kinase 1C [Source:UniProtKB/Swiss-Prot;Acc:Q9LV28]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.