Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
unclear: 25769308 nucleus: 26579155 |
msms PMID:
25769308
doi
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID:
26579155
doi
Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS7A01G247900.2 | |
| TraesCS7B01G143600.3 | |
| TraesCS7D01G246700.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G264000.1 | Wheat | cytosol | 99.7 | 99.7 |
| TraesCS3B01G297300.1 | Wheat | nucleus | 99.7 | 99.7 |
| HORVU3Hr1G063670.2 | Barley | cytosol | 99.1 | 99.1 |
| Os01t0686800-02 | Rice | cytosol | 90.66 | 90.12 |
| EES01286 | Sorghum | cytosol | 84.34 | 84.34 |
| TraesCS1A01G378000.1 | Wheat | cytosol, golgi, nucleus, unclear | 81.63 | 80.9 |
| GSMUA_Achr1P05500_001 | Banana | cytosol | 64.16 | 78.31 |
| GSMUA_Achr5P10020_001 | Banana | cytosol | 70.48 | 77.48 |
| GSMUA_Achr1P11860_001 | Banana | cytosol | 63.55 | 77.29 |
| PGSC0003DMT400041253 | Potato | cytosol | 18.98 | 74.12 |
| PGSC0003DMT400074094 | Potato | cytosol | 71.99 | 73.31 |
| Solyc06g069010.2.1 | Tomato | nucleus | 71.99 | 73.31 |
| Solyc03g119040.2.1 | Tomato | nucleus | 71.39 | 72.7 |
| PGSC0003DMT400014419 | Potato | cytosol | 71.39 | 72.48 |
| Solyc12g040510.1.1 | Tomato | cytosol | 71.69 | 72.34 |
| PGSC0003DMT400040923 | Potato | cytosol | 71.69 | 72.34 |
| KRH60497 | Soybean | endoplasmic reticulum, nucleus | 70.78 | 72.31 |
| VIT_17s0000g02750.t01 | Wine grape | cytosol, plastid | 71.08 | 72.17 |
| KRH41792 | Soybean | nucleus | 70.18 | 71.69 |
| Bra031014.1-P | Field mustard | cytosol | 69.88 | 70.95 |
| Bra025931.1-P | Field mustard | cytosol | 69.58 | 70.43 |
| AT1G18080.1 | Thale cress | cytosol | 69.28 | 70.34 |
| AT3G18130.1 | Thale cress | cytosol | 68.98 | 70.25 |
| Bra016570.1-P | Field mustard | cytosol | 68.98 | 70.03 |
| CDX92200 | Canola | extracellular | 68.37 | 69.85 |
| CDX95784 | Canola | cytosol | 68.37 | 69.85 |
| AT1G48630.1 | Thale cress | cytosol | 68.37 | 69.63 |
| CDX95554 | Canola | cytosol | 68.37 | 69.63 |
| CDY18497 | Canola | cytosol | 68.37 | 69.63 |
| CDX81860 | Canola | cytosol | 52.41 | 69.6 |
| CDX83869 | Canola | cytosol | 52.41 | 69.6 |
| CDX96736 | Canola | cytosol | 52.41 | 69.6 |
| CDY21720 | Canola | cytosol | 52.41 | 69.6 |
| Bra022282.1-P | Field mustard | cytosol | 68.07 | 69.54 |
| CDY26186 | Canola | cytosol | 52.11 | 69.2 |
| CDY64888 | Canola | cytosol | 62.05 | 68.9 |
| CDY60778 | Canola | cytosol, plastid | 51.81 | 68.8 |
| Bra018745.1-P | Field mustard | cytosol | 61.75 | 68.79 |
| Bra032261.1-P | Field mustard | cytosol | 67.47 | 68.5 |
| CDY44104 | Canola | cytosol | 61.14 | 68.12 |
| CDX93686 | Canola | cytosol | 61.14 | 68.12 |
| CDX86074 | Canola | cytosol | 61.14 | 68.12 |
| Bra021294.1-P | Field mustard | cytosol | 66.87 | 68.1 |
| CDY71917 | Canola | cytosol | 49.4 | 67.21 |
| CDY59680 | Canola | cytosol | 44.58 | 65.78 |
| CDY52180 | Canola | cytosol | 31.63 | 64.81 |
| KRH48610 | Soybean | cytosol | 54.52 | 53.24 |
| Bra000607.1-P | Field mustard | cytosol | 47.89 | 40.15 |
| CDX77303 | Canola | cytosol | 23.8 | 25.57 |
| CDX77299 | Canola | plastid | 6.93 | 23.71 |
| CDY46056 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 39.16 | 14.46 |
| TraesCS5A01G043100.1 | Wheat | plastid | 17.17 | 10.96 |
Protein Annotations
| MapMan:17.1.3.1.33 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0016020 | GO:GO:0050832 |
| GO:GO:0060267 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19868 | PANTHER:PTHR19868:SF3 | SMART:SM00320 |
| SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS3A01G263900 | EnsemblPlants:TraesCS3A01G263900.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | TIGR:cd00200 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3A:-:487853470..487855155
Molecular Weight (calculated)
36180.5 Da
IEP (calculated)
6.387
GRAVY (calculated)
-0.117
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGAQESLVY AGVMRGHNDV VTAIATPIDN SPFIVSSSRD KSLLVWDLTN PIQATQDSSS EYGVPFRRLT GHGHFVQDVV LSSDGQFALS GSWDGELRLW
101: DLSTGVTTRR FVGHEKDVLS VAFSIDNRQI VSASRDRTIK LWNTLGECKY TIGGDLGGGE GHTGWVSCVR FSPNNFAPTI VSGSWDRSVK VWNLTNCKLR
201: CTLDGHGGYV SAVAVSPDGS LCASGGKDGV TLLWDLTEGK RLYSLDAGSI INSLCFSPNR YWLCAATQDS IKIWDLESKH IVQDLRPEVP VSTKQMLYCT
301: CLSWSADAST LYAGYTDGTI RIYKISGFSY SS
101: DLSTGVTTRR FVGHEKDVLS VAFSIDNRQI VSASRDRTIK LWNTLGECKY TIGGDLGGGE GHTGWVSCVR FSPNNFAPTI VSGSWDRSVK VWNLTNCKLR
201: CTLDGHGGYV SAVAVSPDGS LCASGGKDGV TLLWDLTEGK RLYSLDAGSI INSLCFSPNR YWLCAATQDS IKIWDLESKH IVQDLRPEVP VSTKQMLYCT
301: CLSWSADAST LYAGYTDGTI RIYKISGFSY SS
001: MAEGLVLKGT MRAHTDMVTA IATPIDNADI IVSASRDKSI ILWKLTKDDK AYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLAAGVSTRR
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TISEGGEGHR DWVSCVRFSP NTLQPTIVSA SWDKTVKVWN LSNCKLRSTL AGHTGYVSTV
201: AVSPDGSLCA SGGKDGVVLL WDLAEGKKLY SLEANSVIHA LCFSPNRYWL CAATEHGIKI WDLESKSIVE DLKVDLKAEA EKADNSGPAA TKRKVIYCTS
301: LNWSADGSTL FSGYTDGVIR VWGIGRY
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TISEGGEGHR DWVSCVRFSP NTLQPTIVSA SWDKTVKVWN LSNCKLRSTL AGHTGYVSTV
201: AVSPDGSLCA SGGKDGVVLL WDLAEGKKLY SLEANSVIHA LCFSPNRYWL CAATEHGIKI WDLESKSIVE DLKVDLKAEA EKADNSGPAA TKRKVIYCTS
301: LNWSADGSTL FSGYTDGVIR VWGIGRY
Arabidopsis Description
RACK1ARACK1A_AT [Source:UniProtKB/TrEMBL;Acc:A0A178WHX3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.