Factsheet for Solyc06g069010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478
nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g082350.2.1
Solyc06g083730.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48630.1	Solyc02g082350.2.1	AT4G35470.1	21798944
AT1G48630.1	Solyc06g083730.2.1	AT5G43960.1	21798944
AT3G18130.1	Solyc02g082350.2.1	AT4G35470.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074094	Potato	cytosol	99.08	99.08
Solyc03g119040.2.1	Tomato	nucleus	94.17	94.17
Solyc12g040510.1.1	Tomato	cytosol	91.41	90.58
VIT_17s0000g02750.t01	Wine grape	cytosol, plastid	85.89	85.63
KRH60497	Soybean	endoplasmic reticulum, nucleus	84.36	84.62
KRH41792	Soybean	nucleus	83.74	84.0
CDY71917	Canola	cytosol	61.66	82.38
CDX92200	Canola	extracellular	80.98	81.23
CDY26186	Canola	cytosol	62.27	81.2
Bra031014.1-P	Field mustard	cytosol	81.29	81.04
CDY18497	Canola	cytosol	80.98	80.98
Bra022282.1-P	Field mustard	cytosol	80.67	80.92
CDX95784	Canola	cytosol	80.67	80.92
CDX96736	Canola	cytosol	61.96	80.8
CDY60778	Canola	cytosol, plastid	61.96	80.8
CDY21720	Canola	cytosol	61.96	80.8
Bra025931.1-P	Field mustard	cytosol	81.29	80.79
CDX95554	Canola	cytosol	80.67	80.67
CDY59680	Canola	cytosol	55.52	80.44
AT1G18080.1	Thale cress	cytosol	80.67	80.43
Bra016570.1-P	Field mustard	cytosol	80.67	80.43
Bra032261.1-P	Field mustard	cytosol	80.67	80.43
CDX83869	Canola	cytosol	61.66	80.4
CDX81860	Canola	cytosol	61.66	80.4
AT1G48630.1	Thale cress	cytosol	80.37	80.37
AT3G18130.1	Thale cress	cytosol	80.37	80.37
Bra021294.1-P	Field mustard	cytosol	79.45	79.45
Bra018745.1-P	Field mustard	cytosol	71.78	78.52
CDY64888	Canola	cytosol	71.78	78.26
CDY44104	Canola	cytosol	70.86	77.52
CDX86074	Canola	cytosol	70.86	77.52
CDX93686	Canola	cytosol	70.86	77.52
Zm00001d038923_P001	Maize	plastid	76.07	74.25
Zm00001d009480_P001	Maize	plasma membrane, plastid	75.77	73.95
Os01t0686800-02	Rice	cytosol	75.46	73.65
EES18632	Sorghum	cytosol	74.85	73.05
HORVU3Hr1G063670.2	Barley	cytosol	73.62	72.29
TraesCS3D01G264000.1	Wheat	cytosol	73.62	72.29
TraesCS3B01G297300.1	Wheat	nucleus	73.62	72.29
TraesCS1B01G398800.1	Wheat	plastid	74.23	72.24
TraesCS3A01G263900.1	Wheat	nucleus	73.31	71.99
TraesCS1A01G378000.1	Wheat	cytosol, golgi, nucleus, unclear	73.93	71.94
TraesCS1D01G385000.1	Wheat	cytosol	73.31	71.34
EES01286	Sorghum	cytosol	71.78	70.48
Os05t0552300-02	Rice	cytosol	72.09	69.94
CDY52180	Canola	cytosol	34.66	69.75
HORVU1Hr1G083710.1	Barley	cytosol	69.02	64.1
GSMUA_Achr2P14580_001	Banana	cytosol	54.29	56.73
Bra000607.1-P	Field mustard	cytosol	54.29	44.7
CDX77303	Canola	cytosol	28.83	30.42
CDX77299	Canola	plastid	6.75	22.68
CDY46056	Canola	cytosol, endoplasmic reticulum, plasma membrane	40.8	14.79
Solyc02g069770.2.1	Tomato	nucleus	18.71	11.82

Protein Annotations

MapMan:17.1.3.1.33	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4C874	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19868	PANTHER:PTHR19868:SF3	SMART:SM00320
SUPFAM:SSF50978	EnsemblPlantsGene:Solyc06g069010.2	EnsemblPlants:Solyc06g069010.2.1	UniParc:UPI000276677B	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

No Description!

Coordinates

chr6:+:42818668..42821480

Molecular Weight (calculated)

35954.5 Da

IEP (calculated)

7.137

GRAVY (calculated)

-0.151

Length

326 amino acids

Sequence
(BLAST)

001: MSQESLVLRG TMKAHTDWVT AIATPIDNSD MIVTSSRDKS IIVWSLTKDG SQYGVPRRRL TGHGHFVEDV VLSSDGMFAL SGSWDGELRL WDLQAGTTAR
101: RFVGHTKDVL SVAFSVDNRQ IVSASRDKTI KLWNTLGECK YTIQEQDSHS DWVSCVRFSP NNLQPTIVSG SWDRTVKIWN LTNCKLRSTL AGHSGYVNTV
201: AVSPDGSLCA SGGKDGVILL WDLAEGKKLY SLDAGSIIHT LCFSPNRYWL CAATESSIKI WDLESKSIVV DLKVDLKQES EMFGTAATDS KTKVIYCTSL
301: SWSADGSTLF SGYTDGLIRV WGIGRY

Best Arabidopsis Sequence Match ( AT1G48630.1 )
(BLAST)

001: MAEGLVLKGT MCAHTDMVTA IATPVDNSDV IVTSSRDKSI ILWKLTKEDK SYGVAQRRMT GHSHFVQDVV LSSDGQFALS GSWDGELRLW DLATGESTRR
101: FVGHTKDVLS VAFSTDNRQI VSASRDRTIK LWNTLGECKY TISEADGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLRNTLA GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKAEAE KTDGSTGIGN KTKVIYCTSL
301: NWSADGNTLF SGYTDGVIRV WGIGRY

Arabidopsis Description

RACK1BRACK1B_AT [Source:UniProtKB/TrEMBL;Acc:A0A178W908]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.