Factsheet for Zm00001d038923_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23353019
nucleus: 24677780
mitochondrion: 27297264

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d031470_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48630.1	Zm00001d031470_P001	AT4G35470.1	21798944
AT3G18130.1	Zm00001d031470_P001	AT4G35470.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009480_P001	Maize	plasma membrane, plastid	98.8	98.8
EES18632	Sorghum	cytosol	95.81	95.81
TraesCS1B01G398800.1	Wheat	plastid	86.23	85.97
TraesCS1A01G378000.1	Wheat	cytosol, golgi, nucleus, unclear	86.23	85.97
TraesCS1D01G385000.1	Wheat	cytosol	85.33	85.07
GSMUA_Achr1P11860_001	Banana	cytosol	66.77	81.69
GSMUA_Achr1P05500_001	Banana	cytosol	66.17	81.25
GSMUA_Achr5P10020_001	Banana	cytosol	72.16	79.8
Os05t0552300-02	Rice	cytosol	80.24	79.76
Solyc03g119040.2.1	Tomato	nucleus	74.85	76.69
PGSC0003DMT400014419	Potato	cytosol	74.55	76.15
Solyc06g069010.2.1	Tomato	nucleus	74.25	76.07
PGSC0003DMT400074094	Potato	cytosol	74.25	76.07
VIT_17s0000g02750.t01	Wine grape	cytosol, plastid	73.65	75.23
HORVU1Hr1G083710.1	Barley	cytosol	78.74	74.93
KRH60497	Soybean	endoplasmic reticulum, nucleus	72.75	74.77
KRH41792	Soybean	nucleus	72.16	74.15
Bra025931.1-P	Field mustard	cytosol	72.75	74.09
Bra031014.1-P	Field mustard	cytosol	72.46	74.01
Solyc12g040510.1.1	Tomato	cytosol	72.46	73.56
PGSC0003DMT400040923	Potato	cytosol	72.46	73.56
Bra016570.1-P	Field mustard	cytosol	71.86	73.39
AT1G48630.1	Thale cress	cytosol	71.56	73.31
AT3G18130.1	Thale cress	cytosol	71.26	73.01
PGSC0003DMT400041253	Potato	cytosol	18.56	72.94
CDX95784	Canola	cytosol	70.96	72.92
CDX92200	Canola	extracellular	70.96	72.92
CDY64888	Canola	cytosol	65.27	72.91
Bra018745.1-P	Field mustard	cytosol	64.97	72.82
AT1G18080.1	Thale cress	cytosol	71.26	72.78
CDY18497	Canola	cytosol	70.96	72.7
CDX95554	Canola	cytosol	70.96	72.7
Bra022282.1-P	Field mustard	cytosol	70.66	72.62
Bra032261.1-P	Field mustard	cytosol	70.96	72.48
CDY44104	Canola	cytosol	64.37	72.15
CDX86074	Canola	cytosol	64.37	72.15
CDX93686	Canola	cytosol	64.37	72.15
CDY26186	Canola	cytosol	53.89	72.0
CDX81860	Canola	cytosol	53.59	71.6
CDY60778	Canola	cytosol, plastid	53.59	71.6
CDY21720	Canola	cytosol	53.59	71.6
CDY71917	Canola	cytosol	52.1	71.31
CDX83869	Canola	cytosol	53.29	71.2
CDX96736	Canola	cytosol	53.29	71.2
Bra021294.1-P	Field mustard	cytosol	69.46	71.17
CDY59680	Canola	cytosol	47.6	70.67
CDY52180	Canola	cytosol	32.04	66.05
KRH48610	Soybean	cytosol	54.79	53.82
Bra000607.1-P	Field mustard	cytosol	48.5	40.91
CDX77303	Canola	cytosol	25.75	27.83
CDX77299	Canola	plastid	6.89	23.71
CDY46056	Canola	cytosol, endoplasmic reticulum, plasma membrane	39.52	14.68
Zm00001d013697_P002	Maize	plasma membrane	17.37	11.33
Zm00001d033244_P001	Maize	cytosol, nucleus, plastid	17.07	11.18

Protein Annotations

EntrezGene:100280585	MapMan:17.1.3.1.33	Gene3D:2.130.10.10	ProteinID:AQK88236.1	UniProt:B6SJ21	EMBL:EU952736
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19868	PANTHER:PTHR19868:SF3	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000182AF25	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d038923	EnsemblPlants:Zm00001d038923_P001
EnsemblPlants:Zm00001d038923_T001	SEG:seg	:	:	:	:

Description

receptor for activated C kinase1Guanine nucleotide-binding protein beta subunit-like protein

Coordinates

chr6:+:167106090..167108422

Molecular Weight (calculated)

36238.5 Da

IEP (calculated)

6.591

GRAVY (calculated)

-0.174

Length

334 amino acids

Sequence
(BLAST)

001: MAGAQESLSL VGTMRGHNGE VTAIATPIDN SPFIVSSSRD KSLLVWDLTN PVHSTPESGA TADYGVPFRR LTGHSHFVQD VVLSSDGQFA LSGSWDGELR
101: LWDLSTGLTT RRFVGHEKDV LSVAFSVDNR QIVSASRDKT IKLWNTLGEC KYTIGGDLGG GEGHNGWVSC VRFSPNTFQP TIVSGSWDRT VKVWNLTNCK
201: LRCTLDGHGG YVNAVAVSPD GSLCASGGKD GVTLLWDLAE GKRLYSLDAG SIIHSLCFSP NRYWLCAATQ DSVKIWDLES KHVVQDLKPD IQISKNQILY
301: CTSLSWSADG STLYTGYTDG SIRVWKISGY GYAG

Best Arabidopsis Sequence Match ( AT1G18080.1 )
(BLAST)

001: MAEGLVLKGT MRAHTDMVTA IATPIDNADI IVSASRDKSI ILWKLTKDDK AYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLAAGVSTRR
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TISEGGEGHR DWVSCVRFSP NTLQPTIVSA SWDKTVKVWN LSNCKLRSTL AGHTGYVSTV
201: AVSPDGSLCA SGGKDGVVLL WDLAEGKKLY SLEANSVIHA LCFSPNRYWL CAATEHGIKI WDLESKSIVE DLKVDLKAEA EKADNSGPAA TKRKVIYCTS
301: LNWSADGSTL FSGYTDGVIR VWGIGRY

Arabidopsis Description

RACK1ARACK1A_AT [Source:UniProtKB/TrEMBL;Acc:A0A178WHX3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.