Factsheet for Zm00001d033244_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91177	Sorghum	cytosol, nucleus, plastid	96.47	96.09
Zm00001d013697_P002	Maize	plasma membrane	94.12	93.75
Os03t0625900-01	Rice	nucleus	80.2	80.04
HORVU5Hr1G010440.3	Barley	cytosol, nucleus	67.25	73.45
TraesCS5A01G043100.1	Wheat	plastid	72.55	71.15
TraesCS5D01G051600.1	Wheat	nucleus	71.96	70.85
KRH11768	Soybean	cytosol, mitochondrion, nucleus	30.39	60.31
GSMUA_Achr8P02970_001	Banana	nucleus	59.02	59.49
GSMUA_Achr10P...	Banana	nucleus	58.82	57.47
CDY39169	Canola	cytosol, nucleus, plastid	40.59	55.65
VIT_10s0003g04610.t01	Wine grape	nucleus	54.9	53.95
KRH36772	Soybean	nucleus	51.76	53.23
PGSC0003DMT400054611	Potato	nucleus	53.14	52.52
Solyc02g069770.2.1	Tomato	nucleus	52.75	52.13
CDY21330	Canola	nucleus	46.67	49.17
CDY62001	Canola	nucleus	46.67	49.07
Bra000814.1-P	Field mustard	nucleus	46.67	48.57
AT4G05410.1	Thale cress	nucleus	47.06	47.62
Bra029576.1-P	Field mustard	nucleus	45.1	47.33
AT4G21130.1	Thale cress	nucleus	43.92	46.76
CDY28878	Canola	nucleus	21.96	37.09
Bra014236.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	12.35	32.31
CDY45049	Canola	endoplasmic reticulum, mitochondrion, nucleus, plastid	11.57	30.26
Zm00001d009480_P001	Maize	plasma membrane, plastid	11.18	17.07
Zm00001d038923_P001	Maize	plastid	11.18	17.07

Protein Annotations

EntrezGene:100273551	MapMan:17.1.3.2.1.9	Gene3D:2.130.10.10	UniProt:B4FW85	EMBL:BT041373	EMBL:BT053806
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0034511
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	ProteinID:ONM07044.1	ProteinID:ONM07047.1	PFAM:PF00400
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19865	PANTHER:PTHR19865:SF0
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00017B762D	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d033244	EnsemblPlants:Zm00001d033244_P001	EnsemblPlants:Zm00001d033244_T001	SEG:seg

Description

U3 snoRNP-associated protein-like EMB2271

Coordinates

chr1:+:255748790..255757682

Molecular Weight (calculated)

56550.6 Da

IEP (calculated)

6.844

GRAVY (calculated)

-0.693

Length

510 amino acids

Sequence
(BLAST)

001: MAPRPRKRAS RPKPRPGSRR GGGGGDDDPF FESEPKRRRG GRDEDIESED SDDDGVAAFG GGFDEDGDER GREEEDEETV GEKKMRMTKE WLKKVTEVAK
101: RGQEDDDEDE SGGRRVAEIL QRKQLEESGR KRREIAARVL PPGPQDGFKV LVKHRQPVTA VALSKDSDKG FSASKDGIIM HWDVETGKCE KYIWPSENVL
201: VSHHAKPPIS AKRSKQVLAL AASSDGRYLA SGGLDRHIHL WDVRSREHIQ AFSGHRGPIS CLAFAPDSSE LFSGSFDRSI MQWNAEDRTY MNCLYGHQNE
301: ILTMDALSKD RILTVARDRT MHLWKIPEES QLVFRAPAAA SLECCCFIDD KEFLSGSDDG SIELWSIMRK KPILIIKNAH PVLCTNLNSV DNDDESPKEN
401: GMHKPENVPS AAQSWVGTVA ARRGSDLVAS GAGNGLVRLW AIKPDSKGAE PLFDLKLDGF VNSLAIAKSG RFIVAGVGQE PRLGRWGRVR SAQNGVAIHP
501: IRLKDVKEDL

Best Arabidopsis Sequence Match ( AT4G05410.1 )
(BLAST)

001: MKYNNEKKKG GSFKRGGKKG SNERDPFFEE EPKKRRKVSY DDDDIESVDS DAEENGFTGG DEDGRRVDGE VEDEDEFADE TAGEKRKRLA EEMLNRRREA
101: MRREREEADN DDDDDEDDDE TIKKSLMQKQ QEDSGRIRRL IASRVQEPLS TDGFSVIVKH RRSVVSVALS DDDSRGFSAS KDGTIMHWDV SSGKTDKYIW
201: PSDEILKSHG MKLREPRNKN HSRESLALAV SSDGRYLATG GVDRHVHIWD VRTREHVQAF PGHRNTVSCL CFRYGTSELY SGSFDRTVKV WNVEDKAFIT
301: ENHGHQGEIL AIDALRKERA LTVGRDRTML YHKVPESTRM IYRAPASSLE SCCFISDNEY LSGSDNGTVA LWGMLKKKPV FVFKNAHQDI PDGITTNGIL
401: ENGDHEPVNN NCSANSWVNA VATSRGSDLA ASGAGNGFVR LWAVETNAIR PLYELPLTGF VNSLAFAKSG KFLIAGVGQE TRFGRWGCLK SAQNGVAIHP
501: LRLA

Arabidopsis Description

YAOU3 snoRNP-associated protein-like YAO [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.