Factsheet for Bra014236.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45049	Canola	endoplasmic reticulum, mitochondrion, nucleus, plastid	93.33	93.33
KRH11768	Soybean	cytosol, mitochondrion, nucleus	28.72	21.79
Bra000814.1-P	Field mustard	nucleus	45.13	17.96
Bra029576.1-P	Field mustard	nucleus	39.49	15.84
AT4G05410.1	Thale cress	nucleus	38.46	14.88
HORVU5Hr1G010440.3	Barley	cytosol, nucleus	32.31	13.49
GSMUA_Achr10P...	Banana	nucleus	35.38	13.22
Solyc02g069770.2.1	Tomato	nucleus	34.87	13.18
GSMUA_Achr8P02970_001	Banana	nucleus	33.85	13.04
PGSC0003DMT400054611	Potato	nucleus	34.36	12.98
VIT_10s0003g04610.t01	Wine grape	nucleus	33.85	12.72
Zm00001d033244_P001	Maize	cytosol, nucleus, plastid	32.31	12.35
TraesCS5A01G043100.1	Wheat	plastid	32.82	12.31
EER91177	Sorghum	cytosol, nucleus, plastid	32.31	12.3
KRH36772	Soybean	nucleus	31.28	12.3
TraesCS5D01G051600.1	Wheat	nucleus	32.31	12.16
Os03t0625900-01	Rice	nucleus	31.79	12.13
Zm00001d013697_P002	Maize	plasma membrane	31.79	12.11
Bra018745.1-P	Field mustard	cytosol	12.31	8.05
Bra022282.1-P	Field mustard	cytosol	13.33	8.0
Bra021294.1-P	Field mustard	cytosol	13.33	7.98
Bra032261.1-P	Field mustard	cytosol	12.82	7.65
Bra031014.1-P	Field mustard	cytosol	12.82	7.65
Bra025931.1-P	Field mustard	cytosol	12.82	7.62
Bra016570.1-P	Field mustard	cytosol	12.31	7.34
Bra000607.1-P	Field mustard	cytosol	13.85	6.82

Protein Annotations

EnsemblPlants:Bra014236.1	EnsemblPlants:Bra014236.1-P	EnsemblPlantsGene:Bra014236	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0034511	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	PANTHER:PTHR19865
PANTHER:PTHR19865:SF0	SEG:seg	UniParc:UPI000254617A	UniProt:M4DCM0	MapMan:35.1	:

Description

AT4G05410 (E=1e-033) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA08:-:2308354..2309418

Molecular Weight (calculated)

21706.9 Da

IEP (calculated)

7.112

GRAVY (calculated)

-0.127

Length

195 amino acids

Sequence
(BLAST)

001: MIARSTSPEN SSTETPAKSH IVLESFKSRP FCILCLLTLE SRIVALSVRM IHQDPNCVSR SYEHCFLPMF QTRDFRSLFC FGHQDEILAI DALRKERALT
101: LGRDRTMLLH KMSETSCTIY RAPASSLESC CFINDTEYLS GSDKNGLLKK IPVFLLKNAH SVVAGGITTN ENGDHDCVEY SNSSTTSSWV SSAAV

Best Arabidopsis Sequence Match ( AT4G05410.1 )
(BLAST)

001: MKYNNEKKKG GSFKRGGKKG SNERDPFFEE EPKKRRKVSY DDDDIESVDS DAEENGFTGG DEDGRRVDGE VEDEDEFADE TAGEKRKRLA EEMLNRRREA
101: MRREREEADN DDDDDEDDDE TIKKSLMQKQ QEDSGRIRRL IASRVQEPLS TDGFSVIVKH RRSVVSVALS DDDSRGFSAS KDGTIMHWDV SSGKTDKYIW
201: PSDEILKSHG MKLREPRNKN HSRESLALAV SSDGRYLATG GVDRHVHIWD VRTREHVQAF PGHRNTVSCL CFRYGTSELY SGSFDRTVKV WNVEDKAFIT
301: ENHGHQGEIL AIDALRKERA LTVGRDRTML YHKVPESTRM IYRAPASSLE SCCFISDNEY LSGSDNGTVA LWGMLKKKPV FVFKNAHQDI PDGITTNGIL
401: ENGDHEPVNN NCSANSWVNA VATSRGSDLA ASGAGNGFVR LWAVETNAIR PLYELPLTGF VNSLAFAKSG KFLIAGVGQE TRFGRWGCLK SAQNGVAIHP
501: LRLA

Arabidopsis Description

YAOU3 snoRNP-associated protein-like YAO [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.