Factsheet for Bra029576.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39169	Canola	cytosol, nucleus, plastid	70.37	91.94
Bra000814.1-P	Field mustard	nucleus	77.37	76.73
AT4G05410.1	Thale cress	nucleus	71.81	69.25
VIT_10s0003g04610.t01	Wine grape	nucleus	52.67	49.33
KRH11768	Soybean	cytosol, mitochondrion, nucleus	25.93	49.03
KRH36772	Soybean	nucleus	50.0	48.99
PGSC0003DMT400054611	Potato	nucleus	50.21	47.29
HORVU5Hr1G010440.3	Barley	cytosol, nucleus	44.86	46.68
Solyc02g069770.2.1	Tomato	nucleus	49.38	46.51
GSMUA_Achr8P02970_001	Banana	nucleus	48.35	46.44
EER91177	Sorghum	cytosol, nucleus, plastid	47.74	45.31
Os03t0625900-01	Rice	nucleus	47.53	45.21
Zm00001d033244_P001	Maize	cytosol, nucleus, plastid	47.33	45.1
Zm00001d013697_P002	Maize	plasma membrane	46.91	44.53
GSMUA_Achr10P...	Banana	nucleus	47.74	44.44
TraesCS5A01G043100.1	Wheat	plastid	46.5	43.46
TraesCS5D01G051600.1	Wheat	nucleus	45.88	43.05
Bra014236.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	15.84	39.49
Bra032261.1-P	Field mustard	cytosol	11.11	16.51
Bra031014.1-P	Field mustard	cytosol	11.11	16.51
Bra016570.1-P	Field mustard	cytosol	10.91	16.21
Bra025931.1-P	Field mustard	cytosol	10.91	16.16
Bra022282.1-P	Field mustard	cytosol	10.29	15.38
Bra021294.1-P	Field mustard	cytosol	10.29	15.34
Bra018745.1-P	Field mustard	cytosol	9.26	15.1
Bra000607.1-P	Field mustard	cytosol	10.08	12.37

Protein Annotations

MapMan:17.1.3.2.1.9	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra029576	EnsemblPlants:Bra029576.1	EnsemblPlants:Bra029576.1-P	ncoils:Coil
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0034511
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4ELA8	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19865	PANTHER:PTHR19865:SF0	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI00025425A7	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

AT4G05410 (E=2e-187) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA09:+:16922375..16924396

Molecular Weight (calculated)

54405.4 Da

IEP (calculated)

6.573

GRAVY (calculated)

-0.738

Length

486 amino acids

Sequence
(BLAST)

001: MKYPKGGSIK RGGKKGSNDR DPFFEQETRK RRKVSYDDED IESIESDAEE NGFAEDKREA EDEDEFADET AGEKRKRLAE ALLKRTREAR QREREERDDD
101: DDDEDDDDDI VKTLMKKQQE ETGRVRRAIA SRVQEPLSSD GFSVIVKHRH SVVSVALSDD DARGFSASKD GTILHWDVSS GEKEIYKWPS DEILKSHGMK
201: VREPRNKKHS RATLALAVSS DGRYLATGGV DRHIHVWDVR TREHVQAFPG HRNTVSCLCF RNGSTELYSG SFDRSVKAWN VEDKAFVQDS FGHQDDVLAI
301: DALRKERAIS VGRDRTMQLH KMPEQARMMY RAPASSLESC CFISDTEYLS GSDNGTVALW GMLKKKPIFL LKNEHSVTIN ENGDHDNVEY NNSCTASSWV
401: SSVAVCRGSD LAASGAGNGF VHLMAVEATA LRPLFKLPLS GYVNSMAFAK SGKFLIAGAG QETRFGRWGC LKSAQNGVAI HPLRLS

Best Arabidopsis Sequence Match ( AT4G05410.1 )
(BLAST)

001: MKYNNEKKKG GSFKRGGKKG SNERDPFFEE EPKKRRKVSY DDDDIESVDS DAEENGFTGG DEDGRRVDGE VEDEDEFADE TAGEKRKRLA EEMLNRRREA
101: MRREREEADN DDDDDEDDDE TIKKSLMQKQ QEDSGRIRRL IASRVQEPLS TDGFSVIVKH RRSVVSVALS DDDSRGFSAS KDGTIMHWDV SSGKTDKYIW
201: PSDEILKSHG MKLREPRNKN HSRESLALAV SSDGRYLATG GVDRHVHIWD VRTREHVQAF PGHRNTVSCL CFRYGTSELY SGSFDRTVKV WNVEDKAFIT
301: ENHGHQGEIL AIDALRKERA LTVGRDRTML YHKVPESTRM IYRAPASSLE SCCFISDNEY LSGSDNGTVA LWGMLKKKPV FVFKNAHQDI PDGITTNGIL
401: ENGDHEPVNN NCSANSWVNA VATSRGSDLA ASGAGNGFVR LWAVETNAIR PLYELPLTGF VNSLAFAKSG KFLIAGVGQE TRFGRWGCLK SAQNGVAIHP
501: LRLA

Arabidopsis Description

YAOU3 snoRNP-associated protein-like YAO [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.