Factsheet for Solyc02g069770.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054611	Potato	nucleus	98.06	98.06
KRH11768	Soybean	cytosol, mitochondrion, nucleus	33.53	67.32
VIT_10s0003g04610.t01	Wine grape	nucleus	64.92	64.55
KRH36772	Soybean	nucleus	58.91	61.29
GSMUA_Achr8P02970_001	Banana	nucleus	56.01	57.11
CDY39169	Canola	cytosol, nucleus, plastid	40.5	56.18
Os03t0625900-01	Rice	nucleus	54.46	54.99
GSMUA_Achr10P...	Banana	nucleus	55.43	54.79
CDY62001	Canola	nucleus	50.58	53.81
HORVU5Hr1G010440.3	Barley	cytosol, nucleus	48.64	53.75
CDY21330	Canola	nucleus	50.19	53.51
Bra000814.1-P	Field mustard	nucleus	50.39	53.06
Zm00001d013697_P002	Maize	plasma membrane	52.52	52.93
Zm00001d033244_P001	Maize	cytosol, nucleus, plastid	52.13	52.75
EER91177	Sorghum	cytosol, nucleus, plastid	52.33	52.73
TraesCS5A01G043100.1	Wheat	plastid	52.33	51.92
AT4G05410.1	Thale cress	nucleus	50.58	51.79
TraesCS5D01G051600.1	Wheat	nucleus	51.74	51.54
AT4G21130.1	Thale cress	nucleus	47.67	51.36
Bra029576.1-P	Field mustard	nucleus	46.51	49.38
CDY28878	Canola	nucleus	21.12	36.09
CDY45049	Canola	endoplasmic reticulum, mitochondrion, nucleus, plastid	13.37	35.38
Bra014236.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	13.18	34.87
Solyc12g040510.1.1	Tomato	cytosol	12.02	18.84
Solyc03g119040.2.1	Tomato	nucleus	11.82	18.71
Solyc06g069010.2.1	Tomato	nucleus	11.82	18.71

Protein Annotations

MapMan:17.1.3.2.1.9	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139	GO:GO:0006364
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030515	GO:GO:0032040	GO:GO:0034511
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4B7V9	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19865	PANTHER:PTHR19865:SF0	SMART:SM00320
SUPFAM:SSF50978	EnsemblPlantsGene:Solyc02g069770.2	EnsemblPlants:Solyc02g069770.2.1	UniParc:UPI00027682A4	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:+:39587820..39596405

Molecular Weight (calculated)

58081.6 Da

IEP (calculated)

6.475

GRAVY (calculated)

-0.784

Length

516 amino acids

Sequence
(BLAST)

001: MKNLKKKKAS AQNTQKGSKK RFSIESDPFF HEDNDLKRRK RFGDDEDIES SDDSEDIYGS DDEGVDRNER KDEEEEEEEE TAAEKRKRLA ETFLHSMRES
101: KRKEEEERES EEEYDREERE AMRDSWMVDM LQKEQMEGSG RSRKAIASRI QKPTEGFHLL VKHRQSVTAV TLSEDDLKGF SSSKDGTIVC WDVDSGKTEK
201: YAWPTDEALK SHGAKDPQGR ATKHSKNVLA LAVSSDGRYL ASGGLDRHVH LWDIRTRQHI KAFPGHKGPV SCLTFRQGSS ELFSGSFDRS IKIWNVEDRA
301: YVNTLFGHQS EVLTIDSLRK ERVLTVGRDR TMHLWKVPEE SQLIFRAPAT SLECCCFINN DEFLSGSDDG SIEHWNVTRK KPVHIVKNAH ASLQSVGIEQ
401: SNGALSNGHM ENGTLNPQCH SSSALSWVSA LTVCRNSDLA ASGAGNGSVQ LWTIENESKG ISPLFELPVA GFINSLVFSK SGQFLVAAVG QEPRLGRWGR
501: IADVRNGVFV HPLKHS

Best Arabidopsis Sequence Match ( AT4G05410.1 )
(BLAST)

001: MKYNNEKKKG GSFKRGGKKG SNERDPFFEE EPKKRRKVSY DDDDIESVDS DAEENGFTGG DEDGRRVDGE VEDEDEFADE TAGEKRKRLA EEMLNRRREA
101: MRREREEADN DDDDDEDDDE TIKKSLMQKQ QEDSGRIRRL IASRVQEPLS TDGFSVIVKH RRSVVSVALS DDDSRGFSAS KDGTIMHWDV SSGKTDKYIW
201: PSDEILKSHG MKLREPRNKN HSRESLALAV SSDGRYLATG GVDRHVHIWD VRTREHVQAF PGHRNTVSCL CFRYGTSELY SGSFDRTVKV WNVEDKAFIT
301: ENHGHQGEIL AIDALRKERA LTVGRDRTML YHKVPESTRM IYRAPASSLE SCCFISDNEY LSGSDNGTVA LWGMLKKKPV FVFKNAHQDI PDGITTNGIL
401: ENGDHEPVNN NCSANSWVNA VATSRGSDLA ASGAGNGFVR LWAVETNAIR PLYELPLTGF VNSLAFAKSG KFLIAGVGQE TRFGRWGCLK SAQNGVAIHP
501: LRLA

Arabidopsis Description

YAOU3 snoRNP-associated protein-like YAO [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.