Factsheet for Solyc03g119040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g082350.2.1
Solyc06g083730.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48630.1	Solyc02g082350.2.1	AT4G35470.1	21798944
AT1G48630.1	Solyc06g083730.2.1	AT5G43960.1	21798944
AT3G18130.1	Solyc02g082350.2.1	AT4G35470.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014419	Potato	cytosol	98.16	97.86
Solyc06g069010.2.1	Tomato	nucleus	94.17	94.17
Solyc12g040510.1.1	Tomato	cytosol	92.64	91.79
KRH60497	Soybean	endoplasmic reticulum, nucleus	86.2	86.46
VIT_17s0000g02750.t01	Wine grape	cytosol, plastid	86.5	86.24
KRH41792	Soybean	nucleus	85.58	85.85
CDY71917	Canola	cytosol	62.27	83.2
CDY26186	Canola	cytosol	62.88	82.0
Bra031014.1-P	Field mustard	cytosol	82.21	81.96
Bra025931.1-P	Field mustard	cytosol	82.21	81.71
AT1G18080.1	Thale cress	cytosol	81.9	81.65
CDY60778	Canola	cytosol, plastid	62.58	81.6
CDY21720	Canola	cytosol	62.58	81.6
AT1G48630.1	Thale cress	cytosol	81.6	81.6
CDY18497	Canola	cytosol	81.6	81.6
CDX92200	Canola	extracellular	81.29	81.54
AT3G18130.1	Thale cress	cytosol	81.29	81.29
CDX95554	Canola	cytosol	81.29	81.29
CDX95784	Canola	cytosol	80.98	81.23
Bra022282.1-P	Field mustard	cytosol	80.98	81.23
CDX96736	Canola	cytosol	62.27	81.2
CDX81860	Canola	cytosol	62.27	81.2
Bra016570.1-P	Field mustard	cytosol	81.29	81.04
CDX83869	Canola	cytosol	61.96	80.8
CDY59680	Canola	cytosol	55.52	80.44
Bra032261.1-P	Field mustard	cytosol	80.67	80.43
Bra021294.1-P	Field mustard	cytosol	80.06	80.06
CDY64888	Canola	cytosol	73.01	79.6
Bra018745.1-P	Field mustard	cytosol	72.7	79.53
CDY44104	Canola	cytosol	71.78	78.52
CDX86074	Canola	cytosol	71.78	78.52
CDX93686	Canola	cytosol	71.78	78.52
Zm00001d038923_P001	Maize	plastid	76.69	74.85
Zm00001d009480_P001	Maize	plasma membrane, plastid	76.38	74.55
EES18632	Sorghum	cytosol	75.46	73.65
Os01t0686800-02	Rice	cytosol	75.46	73.65
TraesCS1B01G398800.1	Wheat	plastid	73.93	71.94
HORVU3Hr1G063670.2	Barley	cytosol	73.01	71.69
TraesCS3D01G264000.1	Wheat	cytosol	73.01	71.69
TraesCS3B01G297300.1	Wheat	nucleus	73.01	71.69
TraesCS1A01G378000.1	Wheat	cytosol, golgi, nucleus, unclear	73.62	71.64
EES01286	Sorghum	cytosol	72.7	71.39
TraesCS3A01G263900.1	Wheat	nucleus	72.7	71.39
TraesCS1D01G385000.1	Wheat	cytosol	73.01	71.04
Os05t0552300-02	Rice	cytosol	72.39	70.24
CDY52180	Canola	cytosol	34.05	68.52
HORVU1Hr1G083710.1	Barley	cytosol	68.71	63.82
GSMUA_Achr2P14580_001	Banana	cytosol	53.68	56.09
Bra000607.1-P	Field mustard	cytosol	53.99	44.44
CDX77303	Canola	cytosol	29.75	31.39
CDX77299	Canola	plastid	6.75	22.68
CDY46056	Canola	cytosol, endoplasmic reticulum, plasma membrane	41.41	15.02
Solyc02g069770.2.1	Tomato	nucleus	18.71	11.82

Protein Annotations

MapMan:17.1.3.1.33	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4BM53	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19868	PANTHER:PTHR19868:SF3	SMART:SM00320
SUPFAM:SSF50978	EnsemblPlantsGene:Solyc03g119040.2	EnsemblPlants:Solyc03g119040.2.1	UniParc:UPI00027661BC	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

No Description!

Coordinates

chr3:-:67754938..67756985

Molecular Weight (calculated)

35795.4 Da

IEP (calculated)

7.499

GRAVY (calculated)

-0.138

Length

326 amino acids

Sequence
(BLAST)

001: MAQESLVLRG TMKAHTDWVT AIATPIDNSD MIVTSSRDKS IIVWSLTKDG AQYGVPRRRL TGHGHFVQDV VLSSDGMFAL SGSWDGELRL WDLQAGTTAR
101: RFVGHTKDVL SVAFSVDNRQ IVSASRDKSI KLWNTLGECK YTIQDGDSHS DWVSCVRFSP NTLQPTIVSG SWDRTVKIWN LTNCKLRSTL AGHSGYVNTV
201: AVSPDGSLCA SGGKDGVILL WDLAEGKKLY SLDAGSIIHT LCFSPNRYWL CAATESSIKI WDLESKSIVV DLKVDLKHES EMANESGTAP KTKVIYCTSL
301: SWSADGSTLF SGYTDGLIRV WGIGRY

Best Arabidopsis Sequence Match ( AT1G18080.1 )
(BLAST)

001: MAEGLVLKGT MRAHTDMVTA IATPIDNADI IVSASRDKSI ILWKLTKDDK AYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLAAGVSTRR
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TISEGGEGHR DWVSCVRFSP NTLQPTIVSA SWDKTVKVWN LSNCKLRSTL AGHTGYVSTV
201: AVSPDGSLCA SGGKDGVVLL WDLAEGKKLY SLEANSVIHA LCFSPNRYWL CAATEHGIKI WDLESKSIVE DLKVDLKAEA EKADNSGPAA TKRKVIYCTS
301: LNWSADGSTL FSGYTDGVIR VWGIGRY

Arabidopsis Description

RACK1ARACK1A_AT [Source:UniProtKB/TrEMBL;Acc:A0A178WHX3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.