Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY59680 | Canola | cytosol | 33.98 | 46.67 |
| CDY71917 | Canola | cytosol | 31.39 | 39.75 |
| CDY64888 | Canola | cytosol | 36.57 | 37.79 |
| CDX86074 | Canola | cytosol | 35.92 | 37.25 |
| CDY44104 | Canola | cytosol | 35.92 | 37.25 |
| CDX93686 | Canola | cytosol | 35.92 | 37.25 |
| CDX83869 | Canola | cytosol | 25.57 | 31.6 |
| CDX96736 | Canola | cytosol | 25.57 | 31.6 |
| CDY26186 | Canola | cytosol | 25.57 | 31.6 |
| CDY18497 | Canola | cytosol | 33.33 | 31.6 |
| CDX95554 | Canola | cytosol | 33.33 | 31.6 |
| CDX92200 | Canola | extracellular | 33.01 | 31.38 |
| CDY60778 | Canola | cytosol, plastid | 25.24 | 31.2 |
| CDX95784 | Canola | cytosol | 32.69 | 31.08 |
| CDY21720 | Canola | cytosol | 24.92 | 30.8 |
| CDX81860 | Canola | cytosol | 24.92 | 30.8 |
| KRH60497 | Soybean | endoplasmic reticulum, nucleus | 31.72 | 30.15 |
| Solyc03g119040.2.1 | Tomato | nucleus | 31.39 | 29.75 |
| KRH41792 | Soybean | nucleus | 30.74 | 29.23 |
| PGSC0003DMT400074094 | Potato | cytosol | 30.74 | 29.14 |
| VIT_17s0000g02750.t01 | Wine grape | cytosol, plastid | 30.74 | 29.05 |
| Solyc06g069010.2.1 | Tomato | nucleus | 30.42 | 28.83 |
| PGSC0003DMT400014419 | Potato | cytosol | 30.1 | 28.44 |
| CDY52180 | Canola | cytosol | 14.56 | 27.78 |
| Solyc12g040510.1.1 | Tomato | cytosol | 29.45 | 27.66 |
| PGSC0003DMT400040923 | Potato | cytosol | 29.45 | 27.66 |
| Zm00001d009480_P001 | Maize | plasma membrane, plastid | 27.83 | 25.75 |
| Zm00001d038923_P001 | Maize | plastid | 27.83 | 25.75 |
| EES18632 | Sorghum | cytosol | 27.83 | 25.75 |
| TraesCS1A01G378000.1 | Wheat | cytosol, golgi, nucleus, unclear | 27.51 | 25.37 |
| TraesCS1B01G398800.1 | Wheat | plastid | 27.51 | 25.37 |
| TraesCS1D01G385000.1 | Wheat | cytosol | 27.51 | 25.37 |
| Os01t0686800-02 | Rice | cytosol | 26.86 | 24.85 |
| Os05t0552300-02 | Rice | cytosol | 26.86 | 24.7 |
| TraesCS3D01G264000.1 | Wheat | cytosol | 25.89 | 24.1 |
| TraesCS3B01G297300.1 | Wheat | nucleus | 25.89 | 24.1 |
| HORVU3Hr1G063670.2 | Barley | cytosol | 25.89 | 24.1 |
| EES01286 | Sorghum | cytosol | 25.57 | 23.8 |
| TraesCS3A01G263900.1 | Wheat | nucleus | 25.57 | 23.8 |
| HORVU1Hr1G083710.1 | Barley | cytosol | 24.6 | 21.65 |
| GSMUA_Achr2P14580_001 | Banana | cytosol | 20.39 | 20.19 |
| PGSC0003DMT400041253 | Potato | cytosol | 2.91 | 10.59 |
| CDY39169 | Canola | cytosol, nucleus, plastid | 8.74 | 7.26 |
| CDY45049 | Canola | endoplasmic reticulum, mitochondrion, nucleus, plastid | 4.53 | 7.18 |
| CDX77299 | Canola | plastid | 1.94 | 6.19 |
| CDY21330 | Canola | nucleus | 8.74 | 5.58 |
| CDY62001 | Canola | nucleus | 8.74 | 5.57 |
| CDY28878 | Canola | nucleus | 5.18 | 5.3 |
| CDY46056 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 13.59 | 4.67 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | EnsemblPlants:CDX77303 | ProteinID:CDX77303 | ProteinID:CDX77303.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00128035001 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| PFAM:PF00400 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19868 | PANTHER:PTHR19868:SF3 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EE8101 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
BnaC08g03480D
Coordinates
chrLK031810:+:1045038..1046676
Molecular Weight (calculated)
34394.1 Da
IEP (calculated)
9.316
GRAVY (calculated)
-0.188
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGSSIDNLL VISINGMKGV SINTPLSQDQ QATAEGNFSD ITQQGREILR SLSLRRRRCS LLRRTICTLR KLGRGASSQG SRHWNQSPLD VSWDTRKTSS
101: MLLSPLITVR SFLRLVTVRS SCGTRLESAS IRSLTKVRDT SNGLVVLGLV CNTIAEHSGY LNTGCFALSP DGSLCSSGAK DGAILLWDFA EGKKLYSLEA
201: GSIIHSLSNS IRIWDLESKS VVEDLKGDLK AEAEKSDSSA GTRNETKVIY CKWSADGDTL FSGYTDEVIR VWGFLSLLEK KRRHDDHSNF FYRFKWLLFC
301: TSVLRLIFF
101: MLLSPLITVR SFLRLVTVRS SCGTRLESAS IRSLTKVRDT SNGLVVLGLV CNTIAEHSGY LNTGCFALSP DGSLCSSGAK DGAILLWDFA EGKKLYSLEA
201: GSIIHSLSNS IRIWDLESKS VVEDLKGDLK AEAEKSDSSA GTRNETKVIY CKWSADGDTL FSGYTDEVIR VWGFLSLLEK KRRHDDHSNF FYRFKWLLFC
301: TSVLRLIFF
001: MAEGLVLKGT MRAHTDMVTA IATPIDNADI IVSASRDKSI ILWKLTKDDK AYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLAAGVSTRR
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TISEGGEGHR DWVSCVRFSP NTLQPTIVSA SWDKTVKVWN LSNCKLRSTL AGHTGYVSTV
201: AVSPDGSLCA SGGKDGVVLL WDLAEGKKLY SLEANSVIHA LCFSPNRYWL CAATEHGIKI WDLESKSIVE DLKVDLKAEA EKADNSGPAA TKRKVIYCTS
301: LNWSADGSTL FSGYTDGVIR VWGIGRY
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TISEGGEGHR DWVSCVRFSP NTLQPTIVSA SWDKTVKVWN LSNCKLRSTL AGHTGYVSTV
201: AVSPDGSLCA SGGKDGVVLL WDLAEGKKLY SLEANSVIHA LCFSPNRYWL CAATEHGIKI WDLESKSIVE DLKVDLKAEA EKADNSGPAA TKRKVIYCTS
301: LNWSADGSTL FSGYTDGVIR VWGIGRY
Arabidopsis Description
RACK1ARACK1A_AT [Source:UniProtKB/TrEMBL;Acc:A0A178WHX3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.