CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69142
CDX72539
CDX75505
CDX94739
CDY13135
CDY22322
CDY36961
CDY40632

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48630.1	CDX69142	AT4G35470.1	21798944
AT1G48630.1	CDX72539	AT4G35470.1	21798944
AT1G48630.1	CDX75505	AT4G35470.1	21798944
AT1G48630.1	CDY40632	AT4G35470.1	21798944
AT1G48630.1	CDX94739	AT5G43960.1	21798944
AT1G48630.1	CDY13135	AT5G43960.1	21798944
AT1G48630.1	CDY22322	AT5G43960.1	21798944
AT1G48630.1	CDY36961	AT5G43960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44104	Canola	cytosol	95.99	96.31
CDX86074	Canola	cytosol	95.99	96.31
CDX93686	Canola	cytosol	95.99	96.31
CDY59680	Canola	cytosol	70.23	93.33
AT1G48630.1	Thale cress	cytosol	90.97	83.44
CDY71917	Canola	cytosol	66.22	81.15
CDY18497	Canola	cytosol	87.96	80.67
CDX95554	Canola	cytosol	87.63	80.37
CDX92200	Canola	extracellular	86.96	80.0
CDX95784	Canola	cytosol	86.62	79.69
CDX83869	Canola	cytosol	64.88	77.6
CDY26186	Canola	cytosol	64.88	77.6
CDX96736	Canola	cytosol	64.55	77.2
CDY60778	Canola	cytosol, plastid	64.55	77.2
CDX81860	Canola	cytosol	64.21	76.8
CDY21720	Canola	cytosol	63.88	76.4
KRH60497	Soybean	endoplasmic reticulum, nucleus	81.61	75.08
VIT_17s0000g02750.t01	Wine grape	cytosol, plastid	81.61	74.62
KRH41792	Soybean	nucleus	80.94	74.46
Solyc03g119040.2.1	Tomato	nucleus	79.6	73.01
CDY52180	Canola	cytosol	39.13	72.22
PGSC0003DMT400074094	Potato	cytosol	78.6	72.09
Solyc06g069010.2.1	Tomato	nucleus	78.26	71.78
PGSC0003DMT400014419	Potato	cytosol	78.26	71.56
Solyc12g040510.1.1	Tomato	cytosol	76.25	69.3
PGSC0003DMT400040923	Potato	cytosol	76.25	69.3
Zm00001d038923_P001	Maize	plastid	72.91	65.27
Zm00001d009480_P001	Maize	plasma membrane, plastid	72.58	64.97
Os01t0686800-02	Rice	cytosol	72.58	64.97
EES18632	Sorghum	cytosol	71.91	64.37
TraesCS1B01G398800.1	Wheat	plastid	71.57	63.88
Os05t0552300-02	Rice	cytosol	71.57	63.69
TraesCS1A01G378000.1	Wheat	cytosol, golgi, nucleus, unclear	71.24	63.58
TraesCS1D01G385000.1	Wheat	cytosol	71.24	63.58
EES01286	Sorghum	cytosol	69.57	62.65
HORVU3Hr1G063670.2	Barley	cytosol	69.23	62.35
TraesCS3B01G297300.1	Wheat	nucleus	69.23	62.35
TraesCS3D01G264000.1	Wheat	cytosol	69.23	62.35
TraesCS3A01G263900.1	Wheat	nucleus	68.9	62.05
HORVU1Hr1G083710.1	Barley	cytosol	67.22	57.27
GSMUA_Achr2P14580_001	Banana	cytosol	56.86	54.49
PGSC0003DMT400041253	Potato	cytosol	13.38	47.06
CDX77303	Canola	cytosol	37.79	36.57
CDX77299	Canola	plastid	5.02	15.46
CDY46056	Canola	cytosol, endoplasmic reticulum, plasma membrane	42.81	14.24
CDY28878	Canola	nucleus	13.38	13.24
CDY39169	Canola	cytosol, nucleus, plastid	15.05	12.1
CDY45049	Canola	endoplasmic reticulum, mitochondrion, nucleus, plastid	7.69	11.79
CDY21330	Canola	nucleus	14.38	8.88
CDY62001	Canola	nucleus	14.38	8.87

Protein Annotations

MapMan:17.1.3.1.33	Gene3D:2.130.10.10	UniProt:A0A078JBC7	EnsemblPlants:CDY64888	ProteinID:CDY64888	ProteinID:CDY64888.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00043812001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19868	PANTHER:PTHR19868:SF3	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE6667
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

BnaC06g40840DBnaC06g40840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JBC7]

Coordinates

chrLK034591:+:25021..26462

Molecular Weight (calculated)

32475.2 Da

IEP (calculated)

6.390

GRAVY (calculated)

-0.150

Length

299 amino acids

Sequence
(BLAST)

001: MAEGIVLKGT MCAHTDMDDK SYGVAQRRLT GHSHFVEDVA LSSDGQFALS GSWDGELRLW DLATGVSTRR FVGHTKDVLS VAFSTDNRQI VSASRDGTIK
101: LWNTLGECKY TIGSDQGGDG HKQWVSCVRF SPNTLVPTIV SASWDQTVKV WNLQNCKLRN TLAGHSGYLN TVAVSPDGSL CASGGKDGAI LLWDLAEGKK
201: LYSLEAGAII HSLCFSPNRY WLCAATENSI RIWDLESKSV VEDLKVDLKA EAEMSDASVG TGNKTKVIYC TSLNWSADGS TLFSGYTDGV IRVWGLGRF

Best Arabidopsis Sequence Match ( AT1G48630.1 )
(BLAST)

001: MAEGLVLKGT MCAHTDMVTA IATPVDNSDV IVTSSRDKSI ILWKLTKEDK SYGVAQRRMT GHSHFVQDVV LSSDGQFALS GSWDGELRLW DLATGESTRR
101: FVGHTKDVLS VAFSTDNRQI VSASRDRTIK LWNTLGECKY TISEADGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLRNTLA GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKAEAE KTDGSTGIGN KTKVIYCTSL
301: NWSADGNTLF SGYTDGVIRV WGIGRY

Arabidopsis Description

RACK1BRACK1B_AT [Source:UniProtKB/TrEMBL;Acc:A0A178W908]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.