CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027517.1-P	Field mustard	cytosol, mitochondrion	98.48	98.48
CDY36961	Canola	cytosol	94.16	92.36
CDX94739	Canola	cytosol	73.81	83.17
AT5G43960.1	Thale cress	cytosol	80.74	82.89
CDY22322	Canola	cytosol	72.29	81.86
KRH67452	Soybean	cytosol	49.35	50.44
KRG95733	Soybean	cytosol	48.48	49.78
VIT_07s0005g04300.t01	Wine grape	cytosol	49.57	49.25
Solyc06g083730.2.1	Tomato	nucleus	46.75	47.47
PGSC0003DMT400051923	Potato	cytosol	47.19	47.08
CDY42844	Canola	cytosol	30.09	31.24
CDY16827	Canola	cytosol	29.22	29.74
CDY23092	Canola	mitochondrion	28.79	28.24
CDX77365	Canola	cytosol	27.92	27.22
CDX85353	Canola	cytosol	27.06	26.94
CDY00813	Canola	cytosol	27.71	26.67
CDY47006	Canola	cytosol	24.89	26.56
CDY02179	Canola	plastid	28.79	26.39
CDX87195	Canola	plastid	29.0	25.77
CDX86290	Canola	cytosol	27.27	25.71
CDX98124	Canola	cytosol	22.29	25.69
CDY51206	Canola	cytosol	22.73	25.61
CDY02983	Canola	cytosol	22.51	25.49
CDY36616	Canola	cytosol	22.29	25.31
CDY36405	Canola	cytosol	21.64	24.69
CDY07356	Canola	cytosol	18.83	22.03
CDY50308	Canola	cytosol	19.48	21.53
CDY54146	Canola	cytosol	20.13	21.18
CDY40904	Canola	nucleus	19.7	21.11
CDY04271	Canola	cytosol	19.48	20.93
CDY04270	Canola	cytosol	18.61	20.62
CDX95953	Canola	cytosol	20.13	19.87
CDY07355	Canola	cytosol	19.48	17.21

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:A0A078FFI0	UniProt:A0A078FFI0	EnsemblPlants:CDY13135
ProteinID:CDY13135	ProteinID:CDY13135.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00070995001	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf
InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177
PANTHER:PTHR10693	PANTHER:PTHR10693:SF29	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427
SUPFAM:SSF54928	UniParc:UPI0004EDB94E	SEG:seg	:	:	:

Description

BnaA09g16820DBnaA09g16820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFI0]

Coordinates

chrLK032031:+:805334..808421

Molecular Weight (calculated)

51719.0 Da

IEP (calculated)

4.645

GRAVY (calculated)

-0.631

Length

462 amino acids

Sequence
(BLAST)

001: MLRLAKTKTR FTKCVIEVGI FQYESKTYGV GSYFVGQYYQ VLQQQPDLIH QFYSDTSKAI RVDGDSSETA DSLLNIHNMV MSLNFTAIEV KTINSVESWE
101: GGVLVAVSGS VKTKEFSNRR SFMQTFFLAP QEKGYFVLND IFQFINEGTV SYHQSSYLSE TKGDEAQLNP PNSHPEEPQV PDYVLEQEAR DYVDAVQIKD
201: DPVDKYSLQE DQHHEDYEDE VEDVEETPRE EVVVDVVHES RAAPPEEPPV GEKSKMSYAS ILRVAKEAAA APVVSTQPSH NRNSQEINEW DQPLMTPSPQ
301: VAAPLAPVQQ PYVTDYGAEA EDGFGFEDFE MKSVYVRNLP SDISASEIEE EFKNFGTIKP DGVFLRTRKD VVGVCYAFVE FEDMTSVENA IKASPIYLGG
401: RHVYIEGRRP NPAGVRGARR GGRGRGGYPT EAPRGRFGSS RGNRDGGGDY RARGNGYNRV GR

Best Arabidopsis Sequence Match ( AT5G43960.1 )
(BLAST)

001: MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FND0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.