CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035946.1-P	Field mustard	cytosol	100.0	100.0
CDX87195	Canola	plastid	96.04	83.85
AT5G60980.3	Thale cress	cytosol	84.58	83.48
CDY42844	Canola	cytosol	81.5	83.15
CDY23092	Canola	mitochondrion	82.82	79.83
CDY02179	Canola	plastid	83.7	75.4
CDY47006	Canola	cytosol	64.76	67.9
KRH03143	Soybean	cytosol, nucleus	51.54	50.87
KRH56802	Soybean	cytosol, nucleus	51.54	50.65
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	49.56	45.0
GSMUA_Achr4P00640_001	Banana	cytosol	35.68	41.86
TraesCS7D01G414000.1	Wheat	cytosol	14.32	40.88
TraesCS7B01G322100.1	Wheat	cytosol	14.1	40.25
TraesCS7A01G421800.1	Wheat	cytosol	14.1	40.0
CDX77365	Canola	cytosol	36.56	35.02
CDY00813	Canola	cytosol	36.78	34.79
CDX98124	Canola	cytosol	30.62	34.66
CDY36405	Canola	cytosol	30.4	34.07
CDY50308	Canola	cytosol	28.85	31.34
CDY51206	Canola	cytosol	28.19	31.22
CDY02983	Canola	cytosol	27.97	31.13
CDY36616	Canola	cytosol	27.75	30.96
CDY54146	Canola	cytosol	29.3	30.3
KXG39124	Sorghum	cytosol	10.57	30.0
CDY22322	Canola	cytosol	26.87	29.9
CDX94739	Canola	cytosol	26.87	29.76
Os03t0418800-01	Rice	mitochondrion	34.14	29.64
CDY13135	Canola	mitochondrion	29.74	29.22
CDX85353	Canola	cytosol	29.74	29.09
CDY40904	Canola	nucleus	27.53	29.0
TraesCS3B01G431000.2	Wheat	cytosol	34.8	28.88
TraesCS3D01G392700.1	Wheat	cytosol, nucleus, plastid	34.58	28.81
CDY36961	Canola	cytosol	29.74	28.66
TraesCS3A01G398600.1	Wheat	cytosol	34.58	28.65
CDY07356	Canola	cytosol	24.89	28.61
HORVU3Hr1G089630.1	Barley	cytosol	33.7	28.18
CDX86290	Canola	cytosol	30.4	28.16
CDY04270	Canola	cytosol	25.77	28.06
HORVU0Hr1G007150.3	Barley	cytosol	17.18	27.96
Os07t0603100-01	Rice	extracellular	34.8	27.77
Zm00001d047289_P003	Maize	plasma membrane	35.46	27.57
CDY04271	Canola	cytosol	25.11	26.51
CDX95953	Canola	cytosol	27.09	26.28
EER94684	Sorghum	cytosol	34.8	25.48
TraesCS2B01G202200.1	Wheat	cytosol	33.48	24.24
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	33.26	24.24
TraesCS2D01G183500.1	Wheat	cytosol	33.48	24.13
TraesCS2A01G176100.1	Wheat	cytosol, nucleus, plastid	33.04	23.81
Zm00001d022071_P002	Maize	cytosol	30.18	23.38
CDY07355	Canola	cytosol	25.77	22.37
GSMUA_Achr1P24520_001	Banana	nucleus	42.29	19.43
OQU90215	Sorghum	cytosol	31.5	18.48

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:A0A078FVL8	UniProt:A0A078FVL8	EnsemblPlants:CDY16827
ProteinID:CDY16827	ProteinID:CDY16827.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00094712001	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf
InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177
PANTHER:PTHR10693	PANTHER:PTHR10693:SF27	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427
SUPFAM:SSF54928	UniParc:UPI0002541FB7	SEG:seg	:	:	:

Description

BnaA09g05550DBnaA09g05550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FVL8]

Coordinates

chrLK032067:-:528624..531515

Molecular Weight (calculated)

48739.5 Da

IEP (calculated)

5.054

GRAVY (calculated)

-0.612

Length

454 amino acids

Sequence
(BLAST)

001: MAQQEASTSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSLLTRPDVT GTVTTVTTMQ AINDKIMSLN YEDYTAEIDT ADAQESHERG VIVLVTGRLT
101: GKDNVRKKFS QTFFLAPQDK GYFVLNDVFR FLEEKDVSTQ ARSVTIKDVQ APVEPESVIV SHEAEVEPEP VATIEEEDVE NVAEVYDPCE KDEGVVVDVE
201: PIDPPAQIIH SEILSVSNGD PPTYASILKL MKSSPAPPSL VARNKPRAAA PVRTNQKPAP PPAGHAAAPN DSSGLENVQN SSNVDVEDDG HSIYVRNLPF
301: DTTPTQLEEV FKSFGDVKHE GIQVRSNKQQ GFCFGFVEFE TSSGKQSALE ASPITIGDRQ VVLEEKKTNS RGGNNGGGRG RYFGGRGSFR NESFKGGRGG
401: GVGGGGGRGW YGRGEFSGRP NPRNGGEGYQ RVPQNGGGGR GGGRGGPRGG GVSS

Best Arabidopsis Sequence Match ( AT5G60980.2 )
(BLAST)

001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QQGFCFGFVE FETSSGKQSA LEASPVTIGD RQAVVEEKKT NSRGGGNNGG SRGRYFSGRG SFRNESFKGG
401: RGGGGRGGYG RGGGEFSGRP KSSNPRNGGE GYQRVPQNGG GGRGGRGEGG RGGARGGGSS

Arabidopsis Description

AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.