Factsheet for GSMUA_Achr1P24520_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P00640_001	Banana	cytosol	30.36	77.52
TraesCS7D01G414000.1	Wheat	cytosol	7.69	47.8
KRH45051	Soybean	cytosol	22.06	47.19
TraesCS7B01G322100.1	Wheat	cytosol	7.59	47.17
TraesCS7A01G421800.1	Wheat	cytosol	7.59	46.88
Bra012989.1-P	Field mustard	cytosol	20.45	44.89
KRH03143	Soybean	cytosol, nucleus	20.85	44.78
KRH56802	Soybean	cytosol, nucleus	20.75	44.37
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	22.27	44.0
GSMUA_Achr3P02500_001	Banana	cytosol, plastid	17.0	43.86
AT5G60980.3	Thale cress	cytosol	20.34	43.7
GSMUA_Achr8P16490_001	Banana	cytosol	19.64	43.69
Bra029343.1-P	Field mustard	cytosol	19.84	43.65
CDY42844	Canola	cytosol	19.53	43.37
KRH01288	Soybean	cytosol	20.85	43.28
Solyc10g083060.1.1	Tomato	cytosol	3.64	42.86
Solyc02g088920.2.1	Tomato	cytosol	17.0	42.53
CDY23092	Canola	mitochondrion	20.24	42.46
CDY16827	Canola	cytosol	19.43	42.29
Bra035946.1-P	Field mustard	cytosol	19.43	42.29
GSMUA_Achr6P12010_001	Banana	cytosol	15.38	41.76
VIT_01s0011g00400.t01	Wine grape	cytosol	20.45	41.74
GSMUA_Achr10P...	Banana	cytosol	15.89	41.64
VIT_14s0068g00310.t01	Wine grape	cytosol	21.96	41.02
CDY02179	Canola	plastid	20.85	40.87
GSMUA_Achr8P17510_001	Banana	cytosol	6.17	39.61
GSMUA_Achr8P00910_001	Banana	cytosol, plastid	15.99	39.4
Solyc02g030530.1.1	Tomato	cytosol	11.34	39.3
Os03t0418800-01	Rice	mitochondrion	20.34	38.43
Solyc02g066830.2.1	Tomato	cytosol	15.38	38.1
CDY47006	Canola	cytosol	16.6	37.88
CDX87195	Canola	plastid	19.84	37.69
GSMUA_Achr8P17520_001	Banana	cytosol	6.17	37.42
GSMUA_Achr8P17500_001	Banana	cytosol	12.85	36.92
GSMUA_Achr9P01610_001	Banana	cytosol	14.27	36.15
TraesCS3D01G392700.1	Wheat	cytosol, nucleus, plastid	19.84	35.96
HORVU3Hr1G089630.1	Barley	cytosol	19.64	35.73
TraesCS3B01G431000.2	Wheat	cytosol	19.74	35.65
TraesCS3A01G398600.1	Wheat	cytosol	19.74	35.58
PGSC0003DMT400003713	Potato	cytosol	17.51	35.02
Solyc02g032790.1.1	Tomato	cytosol	10.63	34.77
GSMUA_Achr11P...	Banana	cytosol	10.02	34.49
Zm00001d047289_P003	Maize	plasma membrane	20.34	34.42
KRH57274	Soybean	cytosol, mitochondrion	7.39	33.95
EER94684	Sorghum	cytosol	20.85	33.23
HORVU0Hr1G007150.3	Barley	cytosol	9.21	32.62
Os07t0603100-01	Rice	extracellular	18.72	32.51
KXG39124	Sorghum	cytosol	5.26	32.5
Solyc02g030490.1.1	Tomato	cytosol	7.59	30.49
GSMUA_Achr4P30210_001	Banana	cytosol	13.26	29.18
GSMUA_Achr2P10150_001	Banana	cytosol	13.16	28.89
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	17.91	28.41
TraesCS2A01G176100.1	Wheat	cytosol, nucleus, plastid	18.02	28.25
TraesCS2D01G183500.1	Wheat	cytosol	18.02	28.25
TraesCS2B01G202200.1	Wheat	cytosol	17.91	28.23
GSMUA_Achr11P...	Banana	cytosol	13.46	28.18
Zm00001d022071_P002	Maize	cytosol	16.4	27.65
OQU90215	Sorghum	cytosol	18.22	23.26

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSMUA_Achr1G24520_001	EnsemblPlants:GSMUA_Achr1P24520_001	EnsemblPlants:GSMUA_Achr1T24520_001	InterPro:Homeobox-like_sf
InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR017877	InterPro:IPR018222	UniProt:M0S2Q9	InterPro:Myb-like_dom
InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00249
PFAM:PF02136	PFscan:PS50090	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF27
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:SANT/Myb	SMART:SM00360	SUPFAM:SSF46689	SUPFAM:SSF54427
SUPFAM:SSF54928	UniParc:UPI0002957D1B	SEG:seg	:	:	:

Description

Putative G3BP-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G24520_001]

Coordinates

chr1:+:18945742..18958653

Molecular Weight (calculated)

110026.0 Da

IEP (calculated)

4.550

GRAVY (calculated)

-0.669

Length

988 amino acids

Sequence
(BLAST)

001: MSDSHGSFGS LCRLTRSLNV ADAHRTRSSW HQQPKKPYPF NDCGARPSSR ARSIPRAPIE AELRPRPFFP VLSRSAGSST GMALPAASPV SSLTPQVIGS
101: AFVQQYYHIL HQSPEMVHKF YQDSSTVNRP NSDGEMTSVM SVQAINDMIM SLDFRNCFTE IETADSQISY QNGVLIVVTG SFIGQDAIRR KFAQSFFLAP
201: QEKGGYFVLN DVFRFLSETR QREMNYMLGD GTKDDSPQVP ISPEAEPTCQ EHDAPETPLL EENADNMEEL PNQSEDGGSG FDDEVIVDPP ADTGESDSQT
301: VHEVIASGGQ DDLPKKSYAS IVKVMKGSSS PVPVYTTPKE KVEVAPQEPV IVSPAPASTP EVSHPASNNF PENNNNVEEE GHSIYIRNLS LNATAEQVEE
401: EFKKFGPIKP GGVQVRSHKV ERYCFGFVEF ESLKSMQAAI EASPVMIGGR QAIVEEKRTT TRGKFASSPI VNGVVTNNGT GNSGRGRFQL GRGAFRNDNF
501: RGRGSFSSNM GYRRNEFRNR AEYSGRGWGP GFRGSDGYQQ RTFQNGDGMI EQRTFQNGDG DGMIVGRSRG GGPKITAVSA YHWFTQGTSQ EIGLDPHVRL
601: PSYPSYFGDS CQVAKFDEDE EIFSPDFNYF KQKHVAIGMD HQADIPELRS HEFKNHIRDY HDCVSDKWLG APVMPMPDST LLASDGVVLH HNTDCSCPDE
701: GSIRCLRQHV MEAREKLMRK LGQERFVGLG FGDMGEVVAQ KWTEEEEQLF HEVVLSNPAS LGKNFWEKLP QVFPARSSKE LVSYYFNVYM LRKRAAQNRL
801: ELLHVDSDND EWQESDDAEF ATEEEDEIDS VVDSPLADEG AVSGEEDDPE EAGITEKIDD IEDSDYCTFS RPNEKWSWHD VKGCTTGESN LFSSVQFTRS
901: NSNHCSEEQD IQDHSCTSYE GQHNVADICD PNNGLSGLTD NSFFCGHHNL KAWDMSYSSG TEKEDFLSTC DVIDEVFGEE PWESENLS

Best Arabidopsis Sequence Match ( AT5G60980.2 )
(BLAST)

001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QQGFCFGFVE FETSSGKQSA LEASPVTIGD RQAVVEEKKT NSRGGGNNGG SRGRYFSGRG SFRNESFKGG
401: RGGGGRGGYG RGGGEFSGRP KSSNPRNGGE GYQRVPQNGG GGRGGRGEGG RGGARGGGSS

Arabidopsis Description

AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.