Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g030490.1.1 | Tomato | cytosol | 60.6 | 74.39 |
| Solyc02g030530.1.1 | Tomato | cytosol | 61.59 | 65.26 |
| Solyc02g066830.2.1 | Tomato | cytosol | 79.14 | 59.9 |
| Solyc02g088920.2.1 | Tomato | cytosol | 48.34 | 36.96 |
| KRH57274 | Soybean | cytosol, mitochondrion | 24.5 | 34.42 |
| KRH45051 | Soybean | cytosol | 42.38 | 27.71 |
| GSMUA_Achr4P00640_001 | Banana | cytosol | 35.1 | 27.39 |
| KXG39124 | Sorghum | cytosol | 14.24 | 26.88 |
| KRH01288 | Soybean | cytosol | 39.74 | 25.21 |
| VIT_14s0068g00310.t01 | Wine grape | cytosol | 42.05 | 24.01 |
| Solyc06g083300.2.1 | Tomato | nucleus | 37.42 | 23.74 |
| Solyc09g059310.2.1 | Tomato | extracellular, nucleus | 36.42 | 23.21 |
| TraesCS7D01G414000.1 | Wheat | cytosol | 11.92 | 22.64 |
| TraesCS7A01G421800.1 | Wheat | cytosol | 11.92 | 22.5 |
| Solyc06g007780.2.1 | Tomato | cytosol | 35.1 | 22.18 |
| TraesCS7B01G322100.1 | Wheat | cytosol | 11.26 | 21.38 |
| Os03t0418800-01 | Rice | mitochondrion | 30.79 | 17.78 |
| Solyc05g012240.1.1 | Tomato | cytosol | 22.52 | 16.55 |
| HORVU0Hr1G007150.3 | Barley | cytosol | 14.9 | 16.13 |
| Zm00001d047289_P003 | Maize | plasma membrane | 31.13 | 16.1 |
| Solyc06g083730.2.1 | Tomato | nucleus | 24.17 | 16.04 |
| Solyc09g090940.2.1 | Tomato | nucleus | 24.83 | 16.03 |
| TraesCS3D01G392700.1 | Wheat | cytosol, nucleus, plastid | 26.49 | 14.68 |
| EER94684 | Sorghum | cytosol | 30.13 | 14.68 |
| TraesCS3A01G398600.1 | Wheat | cytosol | 26.49 | 14.6 |
| TraesCS3B01G431000.2 | Wheat | cytosol | 26.16 | 14.44 |
| Os07t0603100-01 | Rice | extracellular | 27.15 | 14.41 |
| HORVU3Hr1G089630.1 | Barley | cytosol | 25.5 | 14.18 |
| Zm00001d022071_P002 | Maize | cytosol | 27.48 | 14.16 |
| TraesCS2B01G202200.1 | Wheat | cytosol | 26.82 | 12.92 |
| TraesCS2D01G183500.1 | Wheat | cytosol | 26.82 | 12.86 |
| HORVU2Hr1G032730.1 | Barley | cytosol, nucleus, peroxisome | 26.49 | 12.84 |
| TraesCS2A01G176100.1 | Wheat | cytosol, nucleus, plastid | 26.49 | 12.7 |
| OQU90215 | Sorghum | cytosol | 27.81 | 10.85 |
| GSMUA_Achr1P24520_001 | Banana | nucleus | 34.77 | 10.63 |
| Solyc10g083060.1.1 | Tomato | cytosol | 1.99 | 7.14 |
| Solyc05g012230.2.1 | Tomato | extracellular | 6.95 | 5.11 |
Protein Annotations
| MapMan:16.9.1 | Gene3D:3.10.450.50 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0030529 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:IPR018222 | UniProt:K4B5M3 |
| InterPro:NTF2 | InterPro:NTF2-like_dom_sf | InterPro:Nuclear_transport_factor_2_euk | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF02136 |
| PFscan:PS50102 | PFscan:PS50177 | PANTHER:PTHR10693 | PANTHER:PTHR10693:SF25 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SUPFAM:SSF54427 | SUPFAM:SSF54928 | EnsemblPlantsGene:Solyc02g032790.1 | EnsemblPlants:Solyc02g032790.1.1 | UniParc:UPI0002767567 | SEG:seg |
Description
No Description!
Coordinates
chr2:-:29233541..29236585
Molecular Weight (calculated)
33863.3 Da
IEP (calculated)
4.399
GRAVY (calculated)
-0.521
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTEFNTLIC SLDYKNYKAE IKSADAQDSF KDGVVNLVTG CLTGKDKLKR KFAQTFFLAP QDKGYFVLND VFRYVEDNEI DTVSEVLNGT EDVQSEVLTL
101: DPEPTHVVDP LNLDQARSHA EEVQHVEEKA NDSLVDRRQI ANERVIVVEI GSYFNEDQHL TNTESANSVA QEDAPKKSYD VKQLVAAVAQ NAAPGASNPT
201: TTSEIDVPES NDVEEEAEGY SIYVRNLPLD VTVAQLEAEF KTYRPIKQGG VQVRSNRQQR FIFGFVEFED MSSMNLYGTV DGAHIFKFNK AKSESLLLQQ
301: RK
101: DPEPTHVVDP LNLDQARSHA EEVQHVEEKA NDSLVDRRQI ANERVIVVEI GSYFNEDQHL TNTESANSVA QEDAPKKSYD VKQLVAAVAQ NAAPGASNPT
201: TTSEIDVPES NDVEEEAEGY SIYVRNLPLD VTVAQLEAEF KTYRPIKQGG VQVRSNRQQR FIFGFVEFED MSSMNLYGTV DGAHIFKFNK AKSESLLLQQ
301: RK
001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QGFCFGFVEF ETSSGKQSAL EASPVTIGDR QAVVEEKKTN SRGGGNNGGS RGRYFSGRGS FRNESFKGGR
401: GGGGRGGYGR GGGEFSGRPK SSNPRNGGEG YQRVPQNGGG GRGGRGEGGR GGARGGGSS
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QGFCFGFVEF ETSSGKQSAL EASPVTIGDR QAVVEEKKTN SRGGGNNGGS RGRYFSGRGS FRNESFKGGR
401: GGGGRGGYGR GGGEFSGRPK SSNPRNGGEG YQRVPQNGGG GRGGRGEGGR GGARGGGSS
Arabidopsis Description
AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.