Factsheet for Solyc05g012240.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g007780.2.1
Solyc06g083300.2.1
Solyc09g059310.2.1
Solyc12g049230.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13730.1	Solyc12g049230.1.1	AT3G13990.1	21798944
AT1G13730.1	Solyc06g007780.2.1	AT5G48650.1	21798944
AT1G13730.1	Solyc06g083300.2.1	AT5G48650.1	21798944
AT1G13730.1	Solyc09g059310.2.1	AT5G48650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072921	Potato	cytosol	70.8	46.04
Solyc10g083060.1.1	Tomato	cytosol	6.08	29.76
Solyc02g030530.1.1	Tomato	cytosol	18.0	25.96
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	24.09	24.03
Solyc02g030490.1.1	Tomato	cytosol	14.36	23.98
Solyc06g083300.2.1	Tomato	nucleus	26.76	23.11
Solyc06g007780.2.1	Tomato	cytosol	26.52	22.8
Solyc09g059310.2.1	Tomato	extracellular, nucleus	26.28	22.78
Solyc02g088920.2.1	Tomato	cytosol	21.9	22.78
CDX98124	Canola	cytosol	22.14	22.69
Bra019707.1-P	Field mustard	cytosol	22.14	22.64
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	25.55	22.58
Solyc02g032790.1.1	Tomato	cytosol	16.55	22.52
CDY50308	Canola	cytosol	22.38	22.01
CDY02983	Canola	cytosol	21.41	21.57
Solyc02g066830.2.1	Tomato	cytosol	20.92	21.55
CDY07356	Canola	cytosol	20.68	21.52
Bra004006.1-P	Field mustard	cytosol	20.68	21.52
CDY36405	Canola	cytosol	21.17	21.48
AT1G13730.1	Thale cress	cytosol	22.14	21.26
CDY51206	Canola	cytosol	21.17	21.22
CDY54146	Canola	cytosol	22.63	21.18
CDY36616	Canola	cytosol	20.68	20.88
CDY04270	Canola	cytosol	21.17	20.86
Bra025122.1-P	Field mustard	cytosol	20.19	20.75
Solyc06g083730.2.1	Tomato	nucleus	22.38	20.22
CDY40904	Canola	nucleus	21.17	20.19
AT1G69250.1	Thale cress	cytosol	20.92	20.14
CDY04271	Canola	cytosol	20.92	20.0
AT2G03640.4	Thale cress	nucleus	21.65	19.65
Solyc09g090940.2.1	Tomato	nucleus	21.9	19.23
CDX95953	Canola	cytosol	21.65	19.02
Bra004367.1-P	Field mustard	cytosol	21.41	18.57
Bra038318.1-P	Field mustard	cytosol	22.38	18.0
CDY07355	Canola	cytosol	20.92	16.44
Bra004005.1-P	Field mustard	cytosol	20.92	16.44
AT3G55540.1	Thale cress	cytosol	12.9	15.87
Solyc05g012230.2.1	Tomato	extracellular	12.17	12.17

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0030529	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	UniProt:K4BXU7
InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136
PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54427	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc05g012240.1	EnsemblPlants:Solyc05g012240.1.1	UniParc:UPI0002765688	SEG:seg

Description

No Description!

Coordinates

chr5:-:5517469..5519543

Molecular Weight (calculated)

45952.8 Da

IEP (calculated)

9.679

GRAVY (calculated)

-0.768

Length

411 amino acids

Sequence
(BLAST)

001: MATHSTGHAA EKVAKAFVAQ YYNILQTRID QSYRFYKEKS ILSWPSSDGE IMSVTTSDGI SDFIMSSHFK GSKVEVKNVD SQSSVAGGVL VIIMAYLIGQ
101: DKSRKRFSQT FFLAPQETGY YVWNDIFRFI GEEEKSSTIV EENGSIDTPL AIQNNAENNV QSKAENNVQS KAENNVQSKA ENNVQSKAEN NVNDKVDQKP
201: SSPKEREQKK KDPVGPAIVE NEAPKITYAS MIKQGRSSPP KNGGLLSAPK KPQPNNLVKS SSTGVLKVAS THSIKVARDN YDNDIEYKSI FVGGLLPNTT
301: KNDLYAVVKE FGPLHIQDVQ LKAYEAYQDG YCCGFVHFQD AISAQKAVYT HHIMVKGKRA YMRYKRHNKV HGDRANSPSE RGEFQGGRRS RSRPQSSDGR
401: WGEGYQQKYY N

Best Arabidopsis Sequence Match ( AT2G03640.1 )
(BLAST)

001: MTPESNAPSV DPQFVGNGFV QEYYNHLYDS TSEVHKFYLE DSMISRPGLD GEIVTIKSLK GINDQIMSID YKSSRIEILT ADSQSTLKNG VVTLVTGLVI
101: GNDGGRRKFS QSFFLVSRNG SYFVLNDTFR YVSDEFVEPE ATKEVEESQS TNAITEPANE SVEAVIVPTE AKTTVTKPAS AIPNGHAKVP EEKVVNENSS
201: LPKAAEAKLQ EEVPKKSFAL IVQSLAQSAG TLQVKASPVK RKPVEKPVAA PERKAPSPIR KQASAESIKP QAQGSSIFVA NLPMDATIEQ LYETFKSFGA
301: IRKDGIQVRS YPEKKNCIGF VAFENGEAVK NVFQAHRESP IRIGNRRASI EEKRGGNNQN GNRVSTRNNS GYKNEDGFRR DGYKPRGSGV NGGRGYGRRN
401: SESNGDGKAY QNNGHGNTEA KN

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IT98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.