CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99633
KRH06147
KRH46640
KRH47571

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13730.1	KRH06147	AT3G13990.1	21798944
AT1G13730.1	KRH47571	AT3G13990.1	21798944
AT1G13730.1	KRG99633	AT5G48650.1	21798944
AT1G13730.1	KRH46640	AT5G48650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	92.48	81.94
KRH45051	Soybean	cytosol	46.36	41.34
KRH03143	Soybean	cytosol, nucleus	46.12	41.3
KRH56802	Soybean	cytosol, nucleus	44.66	39.83
KRH01288	Soybean	cytosol	45.87	39.71
CDX98124	Canola	cytosol	36.89	37.91
CDY36405	Canola	cytosol	37.14	37.78
KRH46640	Soybean	cytosol	41.99	37.45
Bra019707.1-P	Field mustard	cytosol	36.41	37.31
KRG99633	Soybean	cytosol	42.48	36.76
AT1G13730.1	Thale cress	cytosol	37.38	35.98
CDY02983	Canola	cytosol	35.19	35.54
CDY51206	Canola	cytosol	35.19	35.37
KRH57274	Soybean	cytosol, mitochondrion	18.2	34.88
CDY36616	Canola	cytosol	34.22	34.64
Bra025122.1-P	Field mustard	cytosol	32.77	33.75
AT2G03640.4	Thale cress	nucleus	35.68	32.45
CDY50308	Canola	cytosol	32.77	32.3
CDY54146	Canola	cytosol	33.25	31.21
CDY40904	Canola	nucleus	31.31	29.93
AT1G69250.1	Thale cress	cytosol	30.58	29.51
KRH67452	Soybean	cytosol	32.28	29.42
KRG95733	Soybean	cytosol	31.07	28.44
CDY04270	Canola	cytosol	28.64	28.3
CDY07356	Canola	cytosol	26.94	28.1
Bra004006.1-P	Field mustard	cytosol	26.94	28.1
CDY04271	Canola	cytosol	28.64	27.44
CDX95953	Canola	cytosol	30.58	26.92
Bra004367.1-P	Field mustard	cytosol	30.58	26.58
Bra038318.1-P	Field mustard	cytosol	32.52	26.22
KRG90305	Soybean	cytosol	28.16	24.47
KRH33563	Soybean	cytosol	27.91	24.42
Solyc05g012240.1.1	Tomato	cytosol	24.03	24.09
KRG92252	Soybean	cytosol	27.18	23.83
Bra004005.1-P	Field mustard	cytosol	28.16	22.18
CDY07355	Canola	cytosol	28.16	22.18
AT3G55540.1	Thale cress	cytosol	17.72	21.86
PGSC0003DMT400072921	Potato	cytosol	23.54	15.35
Solyc05g012230.2.1	Tomato	extracellular	6.8	6.81

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EMBL:ACUP02004696	EnsemblPlantsGene:GLYMA_07G225500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006810	GO:GO:0008150	GO:GO:0030529
UniProt:I1KMC9	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	EnsemblPlants:KRH50515	ProteinID:KRH50515
ProteinID:KRH50515.1	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF41	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI00023C5AA7	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:40257398..40261912

Molecular Weight (calculated)

45213.5 Da

IEP (calculated)

5.462

GRAVY (calculated)

-0.584

Length

412 amino acids

Sequence
(BLAST)

001: MAVSEGSPTP QTVGNAFVEQ YYSILHQKPD QVHRFYHESS ILSRPEEDGT MTMVTTTLEI NKKILSLDYT SFRVEILSAD AQPSYKDGVI VVVTGCLTGS
101: DNLKRKFTQS FFLAPQDKGY FVLNDVFRYV DEYKSVDIES VPANDAADES APTDAFVPEP EAIHVAEDVP ASQTDVVDAD IGVSKEVSQP LENGNLSVTE
201: KVVPVDHVKE CSHQEHHSHA EKAASNNSLE DTPKKSFASI VNALKENAAP FHVRVSPVKL LEQPRVSSIP APEAPAPSTD SPPEKNNEIG GKAYAIFVAN
301: LPMNATVEQL ERVFQKFGPI KRDGIQVRSN KQQQSCFGFV EFESATSMQS ALEASPPVTL DGRRLSIEER RANNDRGRHS SGRGSYRNDR NDNFRGRGNF
401: GGGHGGGYGN RK

Best Arabidopsis Sequence Match ( AT1G13730.1 )
(BLAST)

001: MALESNAPVV DPNTIGNSFV EKYYNLLYKS PSQVHQFYLD DSVLGRPGSD GEMVSVKSLK AINEQIMSFD YEISKIQILT ADSQASYMNG VVTLVTGLLT
101: VKEGQRMRFS QSFFLVPLNG SYFVLNDVFR YVADEIVEPE ANKKEVEEVI PQVVQPTEQV DEVAEPVTIP TQQPEAKQTT ENTVKKPERA VANGHPKTQE
201: DNVVNDKSNG VDAPKKSFAH IVQDLAQNGA TFNAKASPAK PKSKPVTKPS AARESKAPAP VSEHSSAATI DQQAEGYTIF VANLLMDATP EQLNETFKGF
301: GAITKDGIQV RSYRLKGNCF GFVTFASAEA VKLVLQAHKE SAIRIGNRRV SIEEKRGNND NGRPAMRNGG YRNDNGYRND GYRPRGNGSN GGRGYGRNGS
401: ERRGESRNGE AHNGDGKVHQ NGTVEASR

Arabidopsis Description

At1g13730 [Source:UniProtKB/TrEMBL;Acc:Q9LMX6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.