Factsheet for Bra004005.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07355	Canola	cytosol	100.0	100.0
Bra004006.1-P	Field mustard	cytosol	60.61	80.25
Bra004367.1-P	Field mustard	cytosol	52.01	57.38
AT1G69250.1	Thale cress	cytosol	40.73	49.88
Bra038318.1-P	Field mustard	cytosol	47.99	49.12
Bra019707.1-P	Field mustard	cytosol	26.0	33.83
Bra025122.1-P	Field mustard	cytosol	23.52	30.75
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	22.18	28.16
Bra029343.1-P	Field mustard	cytosol	23.14	26.95
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	23.71	26.67
Bra012989.1-P	Field mustard	cytosol	22.75	26.44
Bra035946.1-P	Field mustard	cytosol	22.37	25.77
Bra015105.1-P	Field mustard	cytosol	21.61	24.35
Solyc05g012240.1.1	Tomato	cytosol	16.44	20.92
Bra037472.1-P	Field mustard	cytosol	18.74	20.0
Bra027517.1-P	Field mustard	cytosol, mitochondrion	17.02	19.26
Bra033707.1-P	Field mustard	cytosol	15.68	18.72
PGSC0003DMT400072921	Potato	cytosol	16.63	13.77
Solyc05g012230.2.1	Tomato	extracellular	5.74	7.3

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra004005	EnsemblPlants:Bra004005.1	EnsemblPlants:Bra004005.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
InterPro:IPR018222	UniProt:M4CIH1	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF41
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0002541980
SEG:seg	:	:	:	:	:

Description

AT1G13730 (E=3e-049) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein

Coordinates

chrA07:-:16250679..16253600

Molecular Weight (calculated)

56748.3 Da

IEP (calculated)

10.323

GRAVY (calculated)

-0.312

Length

523 amino acids

Sequence
(BLAST)

001: MAAEGGALDA RKASEAFVEK YYHTVGTMTH AAHTFYADDC IVTRPGPDGT TMSFSSLEAI KKHYLSSYYD GTTFDVVNVD SQSSLGDGVF IMVIGFLTGK
101: DNLKRKFSQA FYLARPNGVY AVVNDIHRFV DEESSTTRAL PVVESVPEAT KPVEEIKNTA QVHKSTKKKS VKAAEVKKVA TPEKAVTAEK PKEPVAETSA
201: TPALDGAKKS YASMVLSMSR NAAPVQVKAA PVQKPSTVAQ PKPHVAPAPE KKSEQKMVDE PGTSIFVSNL PMDARPPQVY ELFKGFGAIK GNGVQIRSSR
301: FSGSCFAFVS FESVASVKSV LKAAKNNQFK LGEHKLRVKE KQVEYNSSKP SGGRSEGGSM SQSGSVDGRK TPAGSVDGSK TENVSVGGEE DDGFKVVRSR
401: RNRSRSIGKY PLGISFGSFI AVARSRSVNM YVGLLTLVSS GKYPMMLQIL IKKTRILPEA LARAKQAKLM VKPPNTLGET RENALLALFS IKAMKELVQF
501: DLRHQVYSLV RPVQQVKLLP VHI

Best Arabidopsis Sequence Match ( AT1G69250.1 )
(BLAST)

001: MATEGVVPSA QDIAAEFVRQ YYHVLGQLPH EARRLYVDAS VVSRPDVTGT MMSFTSVEAI NKHILSCDFE NTKFEVLSVD SQNSLEDGIF IMVIGFMTGK
101: DNQRRKFSQM FYLARQNTLV VLNDMLRYVD QEDSSTTETP CEPVTEIVRP ADGLKKAEKT ELKQKNVASV EKSVNAAVEK NAAPLDNGKM KQSEKAVITQ
201: KVTEPDAAPQ PDGAKRSFAD IVGSMAKNAA PFQVKSPVQA PVQKPKYVGQ PRAAAAPQKP AYVSKSIKKN DQKVIEVPGT SIFVANLPLN AMPPQLFELF
301: KDFGPIKENG IQVRSSRGNA NPVCFGFISF ETVASVQSVL QAAKNTPFML ADRKLRVKEK EVDYDGSKPS GKTKGGSNKT QNGSADSSKT ENGSADDSKT
401: NGSAEDGEKE FKQVKSRRNR KKSEAAH

Arabidopsis Description

At1g69250 [Source:UniProtKB/TrEMBL;Acc:Q9LDI9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.