Factsheet for PGSC0003DMT400072921

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400051956
PGSC0003DMT400053195
PGSC0003DMT400071822

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13730.1	PGSC0003DMT400051956	AT5G48650.1	21798944
AT1G13730.1	PGSC0003DMT400053195	AT5G48650.1	21798944
AT1G13730.1	PGSC0003DMT400071822	AT5G48650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g012230.2.1	Tomato	extracellular	47.63	73.24
Solyc05g012240.1.1	Tomato	cytosol	46.04	70.8
PGSC0003DMT400053195	Potato	cytosol	10.92	26.95
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	15.35	23.54
CDY02983	Canola	cytosol	14.87	23.04
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	16.93	23.01
Bra019707.1-P	Field mustard	cytosol	14.56	22.89
PGSC0003DMT400051956	Potato	cytosol	17.25	22.85
CDX98124	Canola	cytosol	14.4	22.69
CDY36405	Canola	cytosol	14.4	22.47
CDY51206	Canola	cytosol	14.56	22.44
Bra025122.1-P	Field mustard	cytosol	14.08	22.25
CDY36616	Canola	cytosol	14.24	22.11
CDY50308	Canola	cytosol	14.24	21.53
AT1G13730.1	Thale cress	cytosol	14.4	21.26
CDY54146	Canola	cytosol	14.72	21.18
PGSC0003DMT400003713	Potato	cytosol	16.14	20.65
AT2G03640.4	Thale cress	nucleus	14.72	20.53
PGSC0003DMT400003781	Potato	cytosol	15.03	20.26
CDY40904	Canola	nucleus	13.61	19.95
AT1G69250.1	Thale cress	cytosol	13.45	19.91
CDY04270	Canola	cytosol	13.13	19.9
PGSC0003DMT400071822	Potato	cytosol, plastid	15.03	19.79
CDY07356	Canola	cytosol	12.18	19.49
Bra004006.1-P	Field mustard	cytosol	12.18	19.49
CDY04271	Canola	cytosol	12.97	19.07
PGSC0003DMT400051923	Potato	cytosol	13.92	19.01
CDX95953	Canola	cytosol	13.92	18.8
Bra004367.1-P	Field mustard	cytosol	13.77	18.35
Bra038318.1-P	Field mustard	cytosol	14.4	17.81
AT3G55540.1	Thale cress	cytosol	9.02	17.07
CDY07355	Canola	cytosol	13.77	16.63
Bra004005.1-P	Field mustard	cytosol	13.77	16.63

Protein Annotations

EnsemblPlants:PGSC0003DMT400072921	EnsemblPlantsGene:PGSC0003DMG400028369	EntrezGene:102605415	Gene3D:3.10.450.50	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	ncoils:Coil
PANTHER:PTHR33476	PANTHER:PTHR33476:SF15	PFAM:PF02136	PFscan:PS50177	PGSC:PGSC0003DMG400028369	SEG:seg
SUPFAM:SSF54427	TMHMM:TMhelix	UniParc:UPI000295DC78	UniProt:M1CR71	MapMan:16.9.1	:

Description

RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028369]

Coordinates

chr5:+:553932..559414

Molecular Weight (calculated)

71306.7 Da

IEP (calculated)

5.293

GRAVY (calculated)

-0.633

Length

632 amino acids

Sequence
(BLAST)

001: MATKSTRHAA DKVATAFVVQ YYNILQTLID QSYRFYKEKS VLSWPSSDGE TKSVTTSDGI SDFIMSSHFK GSKVEVKTID SQLSVAGGVL VIVMAYLIGQ
101: DKSRKGFSQT FFLAPQETGY YVFNDIFRFI GEDKSSTIVE ENGSIATPLA TQSKAENNVD DEVDQKPSSP KEEEQKKKAP VAPVIVENEA PKITYASMIK
201: QGRSSPPKNV GLPSAPKKPQ PNNFVQKSSS GDVLKVASTP STRDVAQDNY HNDIEYKSIF VGGLLPNTTK NDLYAVVKEF GPLHIQDVQL KAYEVYETHH
301: IMVKGKRAYM RYKRTNKGLP NGMTLFYMGI VSGMMSAVIA NRKEIEKVNE KFKWTKSLVQ ELEEELNVKE IANDDYEDPN LYSLSMSTVD EPTRQTSEAE
401: KHESMSEIEA ELEAELERLE MSLKVSTFER ISDFVELDPE DEINVVQGDL KLDCLSVQSP DSSESDSHTN GTWIVHSKPA NYPVSPRELS SRLHEVIESR
501: LEARIKELET DLYHSQNRVC SLETQHNLSQ KDFASRESES SECLQSSYWY HEADEETIRI MHGSENAFDT NTRIPPFDGG LIDSPNEKKG GLVHERKQPT
601: LMQLLKTESM AQTRELQVTR KQHYHCSKVP IH

Best Arabidopsis Sequence Match ( AT1G69250.2 )
(BLAST)

001: MATEGVVPSA QDIAAEFVRQ YYHVLGQLPH EARRLYVDAS VVSRPDVTGT MMSFTSVEAI NKHILSCDFE NTKFEVLSVD SQNSLEDGIF IMVIGFMTGK
101: DNQRRKFSQM FYLARQNTLV VLNDMLRYVD QEDSSTTETP CEPVTEIVRP ADGLKKAEKT ELKQKNVASV EKSVNAAVEK NAAPLDNGKM KQSEKAVITQ
201: KVTEPDAAPQ PDGAKRSFAD IVGSMAKNAA PFQVKSPVQA PVQKPKYVGQ PRAAAAPQKP AYVSKSIKKN DQKVIEVPGT SIFVANLPLN AMPPQLFELF
301: KDFGPIKENG IQVRSSRVLI FDLSCLCAIS LLITCPTLVT RIPHFSYVSR VMLIQFASGL SPLKLLPQSR ACFRLPRTRP SCLQTVSFV

Arabidopsis Description

At1g69250 [Source:UniProtKB/TrEMBL;Acc:Q9LDI9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.