Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50308 | Canola | cytosol | 57.14 | 58.37 |
| CDY54146 | Canola | cytosol | 58.78 | 57.18 |
| CDY04270 | Canola | cytosol | 49.65 | 50.84 |
| CDY40904 | Canola | nucleus | 51.29 | 50.81 |
| Bra004006.1-P | Field mustard | cytosol | 46.6 | 50.38 |
| CDY07356 | Canola | cytosol | 46.37 | 50.13 |
| CDY04271 | Canola | cytosol | 50.35 | 50.0 |
| CDX95953 | Canola | cytosol | 52.69 | 48.08 |
| Bra038318.1-P | Field mustard | cytosol | 56.91 | 47.55 |
| Bra004367.1-P | Field mustard | cytosol | 52.22 | 47.05 |
| CDY07355 | Canola | cytosol | 49.88 | 40.73 |
| Bra004005.1-P | Field mustard | cytosol | 49.88 | 40.73 |
| AT1G13730.1 | Thale cress | cytosol | 32.79 | 32.71 |
| KRH50515 | Soybean | cytosol, endoplasmic reticulum, nucleus | 29.51 | 30.58 |
| AT2G03640.4 | Thale cress | nucleus | 31.85 | 30.02 |
| KRG89479 | Soybean | cytosol, endoplasmic reticulum, nucleus | 30.91 | 28.39 |
| AT5G60980.3 | Thale cress | cytosol | 29.74 | 27.61 |
| AT3G55540.1 | Thale cress | cytosol | 18.97 | 24.25 |
| AT3G25150.2 | Thale cress | plastid | 28.81 | 20.95 |
| Solyc05g012240.1.1 | Tomato | cytosol | 20.14 | 20.92 |
| AT5G48650.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 21.55 | 20.09 |
| AT5G43960.1 | Thale cress | cytosol | 20.84 | 19.78 |
| PGSC0003DMT400072921 | Potato | cytosol | 19.91 | 13.45 |
| AT3G07250.1 | Thale cress | nucleus | 18.5 | 11.67 |
| Solyc05g012230.2.1 | Tomato | extracellular | 6.09 | 6.33 |
Protein Annotations
| MapMan:16.9.1 | Gene3D:3.10.450.50 | Gene3D:3.30.70.330 | EntrezGene:843256 | ProteinID:AAF27060.1 | ProteinID:AAG52488.1 |
| ProteinID:AEE34902.1 | ArrayExpress:AT1G69250 | EnsemblPlantsGene:AT1G69250 | RefSeq:AT1G69250 | TAIR:AT1G69250 | RefSeq:AT1G69250-TAIR-G |
| EnsemblPlants:AT1G69250.1 | TAIR:AT1G69250.1 | Unigene:At.25325 | EMBL:BT006208 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0030529 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:IPR018222 |
| RefSeq:NP_177085.1 | InterPro:NTF2 | InterPro:NTF2-like_dom_sf | InterPro:Nuclear_transport_factor_2_euk | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFAM:PF02136 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50102 | PFscan:PS50177 | PANTHER:PTHR10693 | PANTHER:PTHR10693:SF41 | UniProt:Q9LDI9 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54427 | SUPFAM:SSF54928 | UniParc:UPI00000AB26B |
| SEG:seg | : | : | : | : | : |
Description
At1g69250 [Source:UniProtKB/TrEMBL;Acc:Q9LDI9]
Coordinates
chr1:+:26032637..26035504
Molecular Weight (calculated)
46677.3 Da
IEP (calculated)
9.587
GRAVY (calculated)
-0.566
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MATEGVVPSA QDIAAEFVRQ YYHVLGQLPH EARRLYVDAS VVSRPDVTGT MMSFTSVEAI NKHILSCDFE NTKFEVLSVD SQNSLEDGIF IMVIGFMTGK
101: DNQRRKFSQM FYLARQNTLV VLNDMLRYVD QEDSSTTETP CEPVTEIVRP ADGLKKAEKT ELKQKNVASV EKSVNAAVEK NAAPLDNGKM KQSEKAVITQ
201: KVTEPDAAPQ PDGAKRSFAD IVGSMAKNAA PFQVKSPVQA PVQKPKYVGQ PRAAAAPQKP AYVSKSIKKN DQKVIEVPGT SIFVANLPLN AMPPQLFELF
301: KDFGPIKENG IQVRSSRGNA NPVCFGFISF ETVASVQSVL QAAKNTPFML ADRKLRVKEK EVDYDGSKPS GKTKGGSNKT QNGSADSSKT ENGSADDSKT
401: NGSAEDGEKE FKQVKSRRNR KKSEAAH
101: DNQRRKFSQM FYLARQNTLV VLNDMLRYVD QEDSSTTETP CEPVTEIVRP ADGLKKAEKT ELKQKNVASV EKSVNAAVEK NAAPLDNGKM KQSEKAVITQ
201: KVTEPDAAPQ PDGAKRSFAD IVGSMAKNAA PFQVKSPVQA PVQKPKYVGQ PRAAAAPQKP AYVSKSIKKN DQKVIEVPGT SIFVANLPLN AMPPQLFELF
301: KDFGPIKENG IQVRSSRGNA NPVCFGFISF ETVASVQSVL QAAKNTPFML ADRKLRVKEK EVDYDGSKPS GKTKGGSNKT QNGSADSSKT ENGSADDSKT
401: NGSAEDGEKE FKQVKSRRNR KKSEAAH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.