Factsheet for AT3G25150.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77365	Canola	cytosol	66.1	81.86
Bra015105.1-P	Field mustard	cytosol	64.57	81.68
CDY00813	Canola	cytosol	65.93	80.62
KRG99633	Soybean	cytosol	41.4	51.05
KRH46640	Soybean	cytosol	40.03	50.87
Solyc09g059310.2.1	Tomato	extracellular, nucleus	40.03	49.58
PGSC0003DMT400051956	Potato	cytosol	39.69	48.85
Solyc06g083300.2.1	Tomato	nucleus	39.52	48.74
VIT_00s0216g00030.t01	Wine grape	cytosol	43.78	48.67
PGSC0003DMT400053195	Potato	cytosol	20.1	46.09
Solyc06g007780.2.1	Tomato	cytosol	35.95	44.14
VIT_00s2623g00010.t01	Wine grape	cytosol	19.76	41.58
PGSC0003DMT400071822	Potato	cytosol, plastid	33.73	41.25
AT5G60980.3	Thale cress	cytosol	31.86	40.65
AT5G48650.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	29.64	37.99
AT1G13730.1	Thale cress	cytosol	23.34	32.01
AT5G43960.1	Thale cress	cytosol	24.53	32.0
AT2G03640.4	Thale cress	nucleus	22.32	28.92
AT1G69250.1	Thale cress	cytosol	20.95	28.81
AT3G55540.1	Thale cress	cytosol	11.75	20.66
AT3G07250.1	Thale cress	nucleus	19.59	16.99

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EntrezGene:822106	ProteinID:AEE76984.1	ProteinID:AEE76985.1
ArrayExpress:AT3G25150	EnsemblPlantsGene:AT3G25150	RefSeq:AT3G25150	TAIR:AT3G25150	RefSeq:AT3G25150-TAIR-G	EnsemblPlants:AT3G25150.2
TAIR:AT3G25150.2	EMBL:AY070733	EMBL:AY113005	Unigene:At.27515	UniProt:F4J8X6	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0030529	InterPro:IPR000504	InterPro:IPR012677
InterPro:IPR018222	RefSeq:NP_001189969.1	RefSeq:NP_189151.2	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693
PANTHER:PTHR10693:SF27	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928
UniParc:UPI0001E92EAB	SEG:seg	:	:	:	:

Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]

Coordinates

chr3:-:9157078..9160100

Molecular Weight (calculated)

64390.7 Da

IEP (calculated)

7.999

GRAVY (calculated)

-0.429

Length

587 amino acids

Sequence
(BLAST)

001: MNFSVLLYIN SKATFFSSSS IFLFSRRSLF FSRFSCKTLT SAIAKEAFLR SSLRNFPVNR QLRLFQFLDR FFITSICAYL LRESSSHLAF ELDTDTHTAM
101: AMLGAQQVPA AACTPDMVGN AFVPQYYHIL HQSPEHVHRF YQEISKLGRP EENGLMSITS TLQAIDKKIM ALGYGVISAE IATVDTQESH GGGYIVLVTG
201: YLTGKDSVRR TFSQTFFLAP QETGYFVLND MFRFIDEGTV VHGNQIPVNN VQAPVNTYQD TAAAKEIPDD FVQEKYVQEN HAVKQTEVLS KSINEPEKVF
301: TPSEDEQVSA AEEALVTETV NEAPIEVQKV GESDSRTGEI PKRSYASIVK VMKENAAPMS ASRTPTKVEP KKQEDQAIHI PLPTPLSEKS DSGANVAVNE
401: NNQENERALG PSIYLKGLPL DATPALLENE FQKFGLIRTN GIQVRSQKGF CFGFVEFESA SSMQSAIEAS PVMLNGHKVV VEEKRSTARG NYRGRSTFGV
501: NTGYRNEGGR GRGSFGGGRG GYGRTDFNGY GNNRGNNRGG YANRANGDGG GFPRANGNNG RVRRGGGNDA NRATKPVDDA PRVSVAA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.