CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH41792
KRH60497

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48650.1	KRH41792	AT1G48630.1	21798944
AT5G48650.1	KRH60497	AT1G48630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46640	Soybean	cytosol	92.02	94.81
VIT_00s0216g00030.t01	Wine grape	cytosol	61.13	55.11
PGSC0003DMT400051956	Potato	cytosol	53.78	53.67
Solyc06g083300.2.1	Tomato	nucleus	53.15	53.15
Solyc09g059310.2.1	Tomato	extracellular, nucleus	52.1	52.32
PGSC0003DMT400053195	Potato	cytosol	27.52	51.17
Solyc06g007780.2.1	Tomato	cytosol	50.63	50.42
Bra015105.1-P	Field mustard	cytosol	47.48	48.71
CDX77365	Canola	cytosol	47.9	48.1
CDY00813	Canola	cytosol	47.69	47.29
PGSC0003DMT400071822	Potato	cytosol, plastid	45.38	45.0
VIT_00s2623g00010.t01	Wine grape	cytosol	25.21	43.01
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	36.76	42.48
KRH03143	Soybean	cytosol, nucleus	40.97	42.39
KRH56802	Soybean	cytosol, nucleus	40.55	41.77
AT3G25150.2	Thale cress	plastid	51.05	41.4
KRH45051	Soybean	cytosol	40.13	41.34
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	39.5	40.43
KRH01288	Soybean	cytosol	39.92	39.92
CDX85353	Canola	cytosol	37.4	38.36
Bra037472.1-P	Field mustard	cytosol	36.55	35.51
AT5G48650.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	34.03	35.37
CDX86290	Canola	cytosol	36.34	35.31
KRH67452	Soybean	cytosol	31.09	32.74
KRH33563	Soybean	cytosol	31.3	31.63
KRG95733	Soybean	cytosol	29.62	31.33
KRG90305	Soybean	cytosol	30.88	31.01
KRG92252	Soybean	cytosol	30.46	30.85
KRH57274	Soybean	cytosol, mitochondrion	13.03	28.84
AT3G07250.1	Thale cress	nucleus	25.84	18.17

Protein Annotations

EntrezGene:100800392	MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EMBL:ACUP02011236	EnsemblPlantsGene:GLYMA_18G159100
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006810	GO:GO:0008150
GO:GO:0030529	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	UniProt:K7MSK3	EnsemblPlants:KRG99633
ProteinID:KRG99633	ProteinID:KRG99633.1	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF27
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI00029487A0
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:36065488..36070559

Molecular Weight (calculated)

51034.5 Da

IEP (calculated)

5.049

GRAVY (calculated)

-0.488

Length

476 amino acids

Sequence
(BLAST)

001: MATSEQQVPP QTPAADIVGN AFVDQYYHML HESPELVHRF YQDVSKLGRP EQNGIMGITT TMFDINKKIL SLGYGELSAE IVSVDAQESY GGGVIVLVTG
101: FMIGKDDIKQ KFTQCFFLAP QEKGYFVLND VFRYVDENGI QGSAHDIGTP APPDTVADPS VLETQVSEQI SVTAEDGGEE VYNPENGQAA IEEEEAPVPE
201: VLDEIPDDSQ MVAGLASQIE EVPKKSYAYI VKVMKEGAAP SSTVTPVSVK SAHKSQEQQG IAAPPPSSIS ETNGSIINTN EVGNNQETEA EGYSIYVKGL
301: PPTATPAVLE NEFKKFGPIK SGGIQVRSQK GFSFGFVEFE VASAVQSALE ASPILINGRQ VVVEEKRSTN RVLRSSQLGR KHTSRGRFSS GRAPSFRGEG
401: ARGRGNYGNG RSYGRGDFNG RGEYGYRNGN RGGFSRGDGY QRNDHMGTGG GRMNRAGGSA VNPAVKTAGV RVPASA

Best Arabidopsis Sequence Match ( AT3G25150.2 )
(BLAST)

001: MNFSVLLYIN SKATFFSSSS IFLFSRRSLF FSRFSCKTLT SAIAKEAFLR SSLRNFPVNR QLRLFQFLDR FFITSICAYL LRESSSHLAF ELDTDTHTAM
101: AMLGAQQVPA AACTPDMVGN AFVPQYYHIL HQSPEHVHRF YQEISKLGRP EENGLMSITS TLQAIDKKIM ALGYGVISAE IATVDTQESH GGGYIVLVTG
201: YLTGKDSVRR TFSQTFFLAP QETGYFVLND MFRFIDEGTV VHGNQIPVNN VQAPVNTYQD TAAAKEIPDD FVQEKYVQEN HAVKQTEVLS KSINEPEKVF
301: TPSEDEQVSA AEEALVTETV NEAPIEVQKV GESDSRTGEI PKRSYASIVK VMKENAAPMS ASRTPTKVEP KKQEDQAIHI PLPTPLSEKS DSGANVAVNE
401: NNQENERALG PSIYLKGLPL DATPALLENE FQKFGLIRTN GIQVRSQKGF CFGFVEFESA SSMQSAIEAS PVMLNGHKVV VEEKRSTARG NYRGRSTFGV
501: NTGYRNEGGR GRGSFGGGRG GYGRTDFNGY GNNRGNNRGG YANRANGDGG GFPRANGNNG RVRRGGGNDA NRATKPVDDA PRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.