Factsheet for VIT_00s0216g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g02750.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48650.1	VIT_17s0000g02750.t01	AT1G48630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2623g00010.t01	Wine grape	cytosol	48.86	92.47
Solyc09g059310.2.1	Tomato	extracellular, nucleus	56.82	63.29
PGSC0003DMT400051956	Potato	cytosol	55.68	61.64
KRH46640	Soybean	cytosol	53.79	61.47
Solyc06g083300.2.1	Tomato	nucleus	55.3	61.34
KRG99633	Soybean	cytosol	55.11	61.13
PGSC0003DMT400053195	Potato	cytosol	29.36	60.55
Solyc06g007780.2.1	Tomato	cytosol	51.52	56.9
PGSC0003DMT400071822	Potato	cytosol, plastid	50.76	55.83
Bra015105.1-P	Field mustard	cytosol	45.08	51.29
CDX77365	Canola	cytosol	46.02	51.27
CDY00813	Canola	cytosol	45.45	50.0
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	41.67	44.0
AT3G25150.2	Thale cress	plastid	48.67	43.78
VIT_01s0011g00400.t01	Wine grape	cytosol	38.07	41.53
CDX85353	Canola	cytosol	34.28	39.01
VIT_14s0068g00310.t01	Wine grape	cytosol	37.69	37.62
CDX86290	Canola	cytosol	33.9	36.53
AT5G48650.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	31.44	36.24
Bra037472.1-P	Field mustard	cytosol	33.52	36.12
VIT_05s0049g01940.t01	Wine grape	cytosol	28.03	31.16
VIT_07s0005g04300.t01	Wine grape	cytosol	25.19	28.6
AT3G07250.1	Thale cress	nucleus	21.78	16.99

Protein Annotations

EntrezGene:100264206	wikigene:100264206	MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	ProteinID:CCB49998
ProteinID:CCB49998.1	UniProt:F6HCQ3	EMBL:FN595519	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0030529	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	EntrezGene:LOC100264206
wikigene:LOC100264206	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF27	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	TIGR:TC62317	UniParc:UPI00021095DE
ArrayExpress:VIT_00s0216g00030	EnsemblPlantsGene:VIT_00s0216g00030	EnsemblPlants:VIT_00s0216g00030.t01	unigene:Vvi.25092	RefSeq:XP_002273770	RefSeq:XP_002273770.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:13801062..13806806

Molecular Weight (calculated)

57456.1 Da

IEP (calculated)

5.186

GRAVY (calculated)

-0.524

Length

528 amino acids

Sequence
(BLAST)

001: MFPLADPRQQ RPVQTLALAK GRSEKQGFCH LTPPPQQPSQ GLSLYIVLFG VISGFKEIHR SEMAQQAPAG STHAAQVVGN AFVHQYYHIL HQSPELVFRF
101: YQDISKLGRL EENGIMGVTT TMEAINEKIL SLNYGDLIAE IKSVDAQESF GGGVLVLVTG YLTGKDNRSR DFTQSFFLAP QDKGYFVLND LFRYIEDVKY
201: QDGNPGLVSE VEAPLTPEQD PSPVQENHIL EPTPEVPEEV NEEVYNPSEN GEASVEEEEA PVAEVVDEIQ DDQMVTISDS KILEVPKKSY ASIVKVMKES
301: SVPFSSPTPI PPRPVPKIQE QQVTVAPLPT PGAEANAIEN GNNQEGEADG HSIYIRGLPS NATPALLEDE FKKFGPIKSG GVQVRSNKQG FCFGFVEFEV
401: ASAVQSAMEA SPITIGGRQA FVEEKRSTNS SRVNNRTRFS NGRGVVFRNE GGRGRGNYGG NRGYNRGDFN SRSEFGNRGS RGGFPNRGGD GYQRTDHVGS
501: NGGRVNRASG LTVNAAAKTT APRVSASA

Best Arabidopsis Sequence Match ( AT3G25150.2 )
(BLAST)

001: MNFSVLLYIN SKATFFSSSS IFLFSRRSLF FSRFSCKTLT SAIAKEAFLR SSLRNFPVNR QLRLFQFLDR FFITSICAYL LRESSSHLAF ELDTDTHTAM
101: AMLGAQQVPA AACTPDMVGN AFVPQYYHIL HQSPEHVHRF YQEISKLGRP EENGLMSITS TLQAIDKKIM ALGYGVISAE IATVDTQESH GGGYIVLVTG
201: YLTGKDSVRR TFSQTFFLAP QETGYFVLND MFRFIDEGTV VHGNQIPVNN VQAPVNTYQD TAAAKEIPDD FVQEKYVQEN HAVKQTEVLS KSINEPEKVF
301: TPSEDEQVSA AEEALVTETV NEAPIEVQKV GESDSRTGEI PKRSYASIVK VMKENAAPMS ASRTPTKVEP KKQEDQAIHI PLPTPLSEKS DSGANVAVNE
401: NNQENERALG PSIYLKGLPL DATPALLENE FQKFGLIRTN GIQVRSQKGF CFGFVEFESA SSMQSAIEAS PVMLNGHKVV VEEKRSTARG NYRGRSTFGV
501: NTGYRNEGGR GRGSFGGGRG GYGRTDFNGY GNNRGNNRGG YANRANGDGG GFPRANGNNG RVRRGGGNDA NRATKPVDDA PRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.