Factsheet for PGSC0003DMT400051956

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 2
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014419
PGSC0003DMT400040923
PGSC0003DMT400041253
PGSC0003DMT400074094

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48650.1	PGSC0003DMT400014419	AT1G48630.1	21798944
AT5G48650.1	PGSC0003DMT400040923	AT1G48630.1	21798944
AT5G48650.1	PGSC0003DMT400041253	AT1G48630.1	21798944
AT5G48650.1	PGSC0003DMT400074094	AT1G48630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g083300.2.1	Tomato	nucleus	95.81	96.01
PGSC0003DMT400053195	Potato	cytosol	39.41	73.44
PGSC0003DMT400071822	Potato	cytosol, plastid	69.81	69.38
VIT_00s0216g00030.t01	Wine grape	cytosol	61.64	55.68
KRG99633	Soybean	cytosol	53.67	53.78
KRH46640	Soybean	cytosol	51.78	53.46
VIT_00s2623g00010.t01	Wine grape	cytosol	27.88	47.67
Bra015105.1-P	Field mustard	cytosol	45.91	47.2
CDX77365	Canola	cytosol	45.91	46.2
CDY00813	Canola	cytosol	45.49	45.21
AT3G25150.2	Thale cress	plastid	48.85	39.69
CDX85353	Canola	cytosol	35.64	36.64
PGSC0003DMT400003713	Potato	cytosol	36.9	35.63
AT5G48650.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	33.75	35.15
CDX86290	Canola	cytosol	36.06	35.1
Bra037472.1-P	Field mustard	cytosol	35.22	34.29
PGSC0003DMT400003781	Potato	cytosol	29.77	30.28
PGSC0003DMT400051923	Potato	cytosol	27.04	27.86
AT3G07250.1	Thale cress	nucleus	24.53	17.28
PGSC0003DMT400072921	Potato	cytosol	22.85	17.25

Protein Annotations

EntrezGene:102594129	MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	UniProt:M1BSI9
InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136
EnsemblPlantsGene:PGSC0003DMG400020166	PGSC:PGSC0003DMG400020166	EnsemblPlants:PGSC0003DMT400051956	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693
PANTHER:PTHR10693:SF27	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928
UniParc:UPI000295A87F	RefSeq:XP_006352678.1	SEG:seg	:	:	:

Description

RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020166]

Coordinates

chr6:+:58252484..58256992

Molecular Weight (calculated)

51136.5 Da

IEP (calculated)

5.219

GRAVY (calculated)

-0.472

Length

477 amino acids

Sequence
(BLAST)

001: MAAEAAVAVA AVAPVSAQVV ANAFVQQYYH ILHHSPGLVF RFYQDISKLG RPEEDGSMCI TTTMQAINDK ILSLNYGDFR AEIKSVDAQE SFNGGVHVLV
101: TGYLTGKDNL IRNFCQTFFL APQDRGYFVL NDMFRYVETA GQHDTVHVPV IDAVAPVTPE QIVADPPTVP QNHIPEQSTP PAEEADVGEV YNPSENGDVT
201: IVEEEVPVSE VVDEVQDGSE VVAESDNKTG EVPKKSYASI VMHLKESAAT FSPPPAPASR KPMTKSVVQV NQPAATATDG PYSSSDTIDN INNTEAADGY
301: SIYIKGLPMS ATVALLADEF KKFGPIKNGG IQVRSNRQQG FCFGFVEFEV ESAVQKAIEA SPVLIGDRQA VVEEKRSTNS RLNTRGGGRF QSGRGGGFRN
401: DGGRGRGNYV GGRGYGRDDF NGRNEFNNRG GNRGGSSNRG GEGYRRADNT GGGRMSRGGG MSNGTAKTPT PRYSATA

Best Arabidopsis Sequence Match ( AT3G25150.2 )
(BLAST)

001: MNFSVLLYIN SKATFFSSSS IFLFSRRSLF FSRFSCKTLT SAIAKEAFLR SSLRNFPVNR QLRLFQFLDR FFITSICAYL LRESSSHLAF ELDTDTHTAM
101: AMLGAQQVPA AACTPDMVGN AFVPQYYHIL HQSPEHVHRF YQEISKLGRP EENGLMSITS TLQAIDKKIM ALGYGVISAE IATVDTQESH GGGYIVLVTG
201: YLTGKDSVRR TFSQTFFLAP QETGYFVLND MFRFIDEGTV VHGNQIPVNN VQAPVNTYQD TAAAKEIPDD FVQEKYVQEN HAVKQTEVLS KSINEPEKVF
301: TPSEDEQVSA AEEALVTETV NEAPIEVQKV GESDSRTGEI PKRSYASIVK VMKENAAPMS ASRTPTKVEP KKQEDQAIHI PLPTPLSEKS DSGANVAVNE
401: NNQENERALG PSIYLKGLPL DATPALLENE FQKFGLIRTN GIQVRSQKGF CFGFVEFESA SSMQSAIEAS PVMLNGHKVV VEEKRSTARG NYRGRSTFGV
501: NTGYRNEGGR GRGSFGGGRG GYGRTDFNGY GNNRGNNRGG YANRANGDGG GFPRANGNNG RVRRGGGNDA NRATKPVDDA PRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.