Factsheet for PGSC0003DMT400071822

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014419
PGSC0003DMT400040923
PGSC0003DMT400041253
PGSC0003DMT400074094

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48650.1	PGSC0003DMT400014419	AT1G48630.1	21798944
AT5G48650.1	PGSC0003DMT400040923	AT1G48630.1	21798944
AT5G48650.1	PGSC0003DMT400041253	AT1G48630.1	21798944
AT5G48650.1	PGSC0003DMT400074094	AT1G48630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g059310.2.1	Tomato	extracellular, nucleus	83.54	84.6
PGSC0003DMT400051956	Potato	cytosol	69.38	69.81
PGSC0003DMT400053195	Potato	cytosol	31.25	58.59
VIT_00s0216g00030.t01	Wine grape	cytosol	55.83	50.76
KRH46640	Soybean	cytosol	43.75	45.45
KRG99633	Soybean	cytosol	45.0	45.38
Bra015105.1-P	Field mustard	cytosol	39.79	41.16
CDX77365	Canola	cytosol	39.79	40.3
CDY00813	Canola	cytosol	39.58	39.58
VIT_00s2623g00010.t01	Wine grape	cytosol	20.42	35.13
AT3G25150.2	Thale cress	plastid	41.25	33.73
CDX85353	Canola	cytosol	32.29	33.41
CDX86290	Canola	cytosol	33.12	32.45
AT5G48650.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	30.83	32.31
Bra037472.1-P	Field mustard	cytosol	32.08	31.43
PGSC0003DMT400003713	Potato	cytosol	30.0	29.15
PGSC0003DMT400003781	Potato	cytosol	27.08	27.72
PGSC0003DMT400051923	Potato	cytosol	24.38	25.27
AT3G07250.1	Thale cress	nucleus	22.29	15.8
PGSC0003DMT400072921	Potato	cytosol	19.79	15.03

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	UniProt:M1CPC7	InterPro:NTF2
InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	EnsemblPlantsGene:PGSC0003DMG400027944
PGSC:PGSC0003DMG400027944	EnsemblPlants:PGSC0003DMT400071822	PFscan:PS50102	PFscan:PS50177	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI000294B688	SEG:seg	:

Description

RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027944]

Coordinates

chr9:-:31218417..31224429

Molecular Weight (calculated)

51478.5 Da

IEP (calculated)

5.382

GRAVY (calculated)

-0.398

Length

480 amino acids

Sequence
(BLAST)

001: MTAAVAVAAA AAAQPPVSAQ VAINDKILSL NYADFRAEIK SVDSQESFNG GVHVLVTGYL TGKDNLIRNF SQTFFLAPQD RGYFVLNDMF RYVEIAKQQD
101: AVQVPETDVL APVTPEQIVA DPPPAQENHI SEQSTPSAEE ANGGEVYNPP EDDSVPVVVE EVPVAKVVDE VQGDSKMVAE TNIIIEEVPK KSYASIVMHL
201: KESAVTFSPP PAPAPRKIVP KNVEQVRQPL APAPADSPVL SLDFVDNVNN QEGEGMALFL RTDGHSIYIK GLPMSATAAM LEDEFKKFGP IKNGGIQVRS
301: NRQQGFCFGF VEFEVETAVQ KAIEASPILI GGRQAAVEEK KSTSSRGKFN YSPMVSCFVS CDNSLKTCMP IILVVELNYV PSVTGNTRGR YPSGRGNGFR
401: NDGVRGRGNY NGSGRGYNRG DFNGRSEFNN RGGNRGGSSN RGGGDGYQRS DNNGRMNRGG GGGMANGTAK NMTPRISATA

Best Arabidopsis Sequence Match ( AT3G25150.2 )
(BLAST)

001: MNFSVLLYIN SKATFFSSSS IFLFSRRSLF FSRFSCKTLT SAIAKEAFLR SSLRNFPVNR QLRLFQFLDR FFITSICAYL LRESSSHLAF ELDTDTHTAM
101: AMLGAQQVPA AACTPDMVGN AFVPQYYHIL HQSPEHVHRF YQEISKLGRP EENGLMSITS TLQAIDKKIM ALGYGVISAE IATVDTQESH GGGYIVLVTG
201: YLTGKDSVRR TFSQTFFLAP QETGYFVLND MFRFIDEGTV VHGNQIPVNN VQAPVNTYQD TAAAKEIPDD FVQEKYVQEN HAVKQTEVLS KSINEPEKVF
301: TPSEDEQVSA AEEALVTETV NEAPIEVQKV GESDSRTGEI PKRSYASIVK VMKENAAPMS ASRTPTKVEP KKQEDQAIHI PLPTPLSEKS DSGANVAVNE
401: NNQENERALG PSIYLKGLPL DATPALLENE FQKFGLIRTN GIQVRSQKGF CFGFVEFESA SSMQSAIEAS PVMLNGHKVV VEEKRSTARG NYRGRSTFGV
501: NTGYRNEGGR GRGSFGGGRG GYGRTDFNGY GNNRGNNRGG YANRANGDGG GFPRANGNNG RVRRGGGNDA NRATKPVDDA PRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.