CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77365	Canola	cytosol	95.42	96.62
AT3G25150.2	Thale cress	plastid	80.62	65.93
KRH46640	Soybean	cytosol	46.04	47.84
KRG99633	Soybean	cytosol	47.29	47.69
Solyc09g059310.2.1	Tomato	extracellular, nucleus	46.67	47.26
Solyc06g083300.2.1	Tomato	nucleus	45.62	46.01
PGSC0003DMT400051956	Potato	cytosol	45.21	45.49
VIT_00s0216g00030.t01	Wine grape	cytosol	50.0	45.45
PGSC0003DMT400053195	Potato	cytosol	23.75	44.53
Solyc06g007780.2.1	Tomato	cytosol	41.46	41.63
PGSC0003DMT400071822	Potato	cytosol, plastid	39.58	39.58
CDY42844	Canola	cytosol	36.25	39.1
VIT_00s2623g00010.t01	Wine grape	cytosol	21.67	37.28
CDY16827	Canola	cytosol	34.79	36.78
CDX85353	Canola	cytosol	35.42	36.64
CDY23092	Canola	mitochondrion	35.0	35.67
CDX86290	Canola	cytosol	35.0	34.29
CDY02179	Canola	plastid	35.21	33.53
CDY47006	Canola	cytosol	29.38	32.56
CDX87195	Canola	plastid	35.21	32.5
CDX98124	Canola	cytosol	26.88	32.17
CDY36405	Canola	cytosol	26.88	31.85
CDY02983	Canola	cytosol	25.21	29.66
CDY51206	Canola	cytosol	25.0	29.27
CDX94739	Canola	cytosol	24.79	29.02
CDY36616	Canola	cytosol	24.58	28.99
CDY50308	Canola	cytosol	25.0	28.71
CDY22322	Canola	cytosol	24.38	28.68
CDY07356	Canola	cytosol	23.12	28.1
CDY40904	Canola	nucleus	25.0	27.84
CDY13135	Canola	mitochondrion	26.67	27.71
CDY36961	Canola	cytosol	27.08	27.6
CDY54146	Canola	cytosol	24.79	27.11
CDY04270	Canola	cytosol	23.33	26.86
CDY04271	Canola	cytosol	23.54	26.28
CDX95953	Canola	cytosol	23.75	24.36
CDY07355	Canola	cytosol	23.96	21.99

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:A0A078EMW9	EnsemblPlants:CDY00813	ProteinID:CDY00813
ProteinID:CDY00813.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00110725001	InterPro:IPR000504
InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0004EE52E0	SEG:seg

Description

BnaCnng00130D

Coordinates

chrLK031922:-:163506..166251

Molecular Weight (calculated)

52110.9 Da

IEP (calculated)

6.570

GRAVY (calculated)

-0.511

Length

480 amino acids

Sequence
(BLAST)

001: MDFLCFQEES KAMAMLGQTP ACTPDIVGNT FVHQYYHILH QSPQHVHRFY QEISKLGRPE DNGTMSITST LQAIDKKILA LGSGVISAEI ATVDTQESYG
101: GGFLLLVTGY LTGTDGVRRT FTQTFFLARQ ETGYFVLNDM FRYIDDATTV RRTQIPVNNI HQVPVNIHQD PHAVQDIPED FVEEKYVQES HAVGQSDVLS
201: NSINVPEVFT PTEEEQVSVA EDAPAPGIVH EAPHDVHKVG ESDSSRTGEV PKRSYASIVM VMKENAAPMS ASRTPTKVVE PKRQEDHQAT HVPLPTPLSE
301: KSDSRANVAV SGNDQDSERA PGPSIYLKGL PLDATPALLE NEFQKFGPIR TNGIQVRSQK GFCFGFVEFE SASSMQSAIE ASPIILRNHR GRAAFGVGTG
401: YRNEGGRGRG SFRGGRGGGY GRNDFNGYGN NRGNNRGGYA NRANGDGGGF PRRVRRGAGG GIDANGATKP VDAPRVSITA

Best Arabidopsis Sequence Match ( AT3G25150.2 )
(BLAST)

001: MNFSVLLYIN SKATFFSSSS IFLFSRRSLF FSRFSCKTLT SAIAKEAFLR SSLRNFPVNR QLRLFQFLDR FFITSICAYL LRESSSHLAF ELDTDTHTAM
101: AMLGAQQVPA AACTPDMVGN AFVPQYYHIL HQSPEHVHRF YQEISKLGRP EENGLMSITS TLQAIDKKIM ALGYGVISAE IATVDTQESH GGGYIVLVTG
201: YLTGKDSVRR TFSQTFFLAP QETGYFVLND MFRFIDEGTV VHGNQIPVNN VQAPVNTYQD TAAAKEIPDD FVQEKYVQEN HAVKQTEVLS KSINEPEKVF
301: TPSEDEQVSA AEEALVTETV NEAPIEVQKV GESDSRTGEI PKRSYASIVK VMKENAAPMS ASRTPTKVEP KKQEDQAIHI PLPTPLSEKS DSGANVAVNE
401: NNQENERALG PSIYLKGLPL DATPALLENE FQKFGLIRTN GIQVRSQKGF CFGFVEFESA SSMQSAIEAS PVMLNGHKVV VEEKRSTARG NYRGRSTFGV
501: NTGYRNEGGR GRGSFGGGRG GYGRTDFNGY GNNRGNNRGG YANRANGDGG GFPRANGNNG RVRRGGGNDA NRATKPVDDA PRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.