CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36616	Canola	cytosol	98.05	98.77
Bra025122.1-P	Field mustard	cytosol	92.44	94.75
CDY02983	Canola	cytosol	92.93	93.38
CDX98124	Canola	cytosol	60.0	61.35
CDY36405	Canola	cytosol	60.24	60.99
AT2G03640.4	Thale cress	nucleus	66.1	59.82
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	35.37	35.19
CDY50308	Canola	cytosol	32.44	31.82
CDY54146	Canola	cytosol	33.9	31.66
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	35.85	31.61
CDY40904	Canola	nucleus	31.22	29.7
CDY04270	Canola	cytosol	29.51	29.02
CDY07356	Canola	cytosol	27.56	28.61
CDY04271	Canola	cytosol	30.0	28.6
CDY16827	Canola	cytosol	31.22	28.19
CDY42844	Canola	cytosol	30.49	28.09
CDX95953	Canola	cytosol	31.46	27.56
CDY23092	Canola	mitochondrion	30.73	26.75
CDY47006	Canola	cytosol	28.05	26.56
CDY02179	Canola	plastid	31.95	25.99
CDX77365	Canola	cytosol	29.51	25.53
CDX87195	Canola	plastid	32.2	25.38
CDY00813	Canola	cytosol	29.27	25.0
CDY07355	Canola	cytosol	31.22	24.47
CDX85353	Canola	cytosol	27.56	24.35
CDX86290	Canola	cytosol	28.78	24.08
CDY13135	Canola	mitochondrion	25.61	22.73
CDX94739	Canola	cytosol	22.68	22.68
CDY22322	Canola	cytosol	22.44	22.55
CDY36961	Canola	cytosol	25.85	22.51
Solyc05g012240.1.1	Tomato	cytosol	21.22	21.17
PGSC0003DMT400072921	Potato	cytosol	22.44	14.56
Solyc05g012230.2.1	Tomato	extracellular	5.85	5.84

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:A0A078IMJ0	UniProt:A0A078IMJ0	EnsemblPlants:CDY51206
ProteinID:CDY51206	ProteinID:CDY51206.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00002959001	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf
InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177
PANTHER:PTHR10693	PANTHER:PTHR10693:SF41	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427
SUPFAM:SSF54928	UniParc:UPI0004EF0415	SEG:seg	:	:	:

Description

BnaA06g39850DBnaA06g39850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IMJ0]

Coordinates

chrLK032975:+:49893..52363

Molecular Weight (calculated)

44165.7 Da

IEP (calculated)

9.819

GRAVY (calculated)

-0.619

Length

410 amino acids

Sequence
(BLAST)

001: MTPVSNAPSV DAQIVGNAFV QKYYTHLYEK PAEVYRFYLE ESVLGRPGLD GEMVSVKSLK AINDQIMSVD YQNSKIQILT ADSQASLKSA VVTLVAGLVI
101: GKDGERKSFT QSFFLVPQNG SYFVLNDVFR YVSDVFVAPE ATKEAEVEVE ESPKEAVPAE PAKEVVEPAA RATNEEKVVN GNSNLPKAAE AKPQEDTGVK
201: KSFAVIAAQN GAQTNAKASP AKHKPVEKPR VAPQTKAAAP VAAAPQPKAP SAKTSEQPPA QGGSIFVANL PMDASPEQLF ETFKGFGAIR RGGIQVRSYT
301: EQRNCFGFVA FENSESIKNV FKAHNESPIF IGNRRASIEE KRGKFLNNGG RAYARNNGNN RNENGYRKDG YRPRGNGVNG GRGSGRNGPE RQSGDAKASQ
401: NGHGNAQAKN

Best Arabidopsis Sequence Match ( AT2G03640.2 )
(BLAST)

001: MTPESNAPSV DPQFVGNGFV QEYYNHLYDS TSEVHKFYLE DSMISRPGLD GEIVTIKSLK GINDQIMSID YKSSRIEILT ADSQSTLKNG VVTLVTGLVI
101: GNDGGRRKFS QSFFLVSRNG SYFVLNDTFR YVSDEFVEPE ATKEVEESQS TNAITAEPAN ESVEAVIVPT EAKTTVTKPA SAIPNGHAKV PEEKVVNENS
201: SLPKAAEAKL QEEVPKKSFA LIVQSLAQSA GTLQVKASPV KRKPVEKPVA APERKAPSPI RKQASAESIK PQAQGSSIFV ANLPMDATIE QLYETFKSFG
301: AIRKDGIQVR SYPEKKNCIG FVAFENGEAV KNVFQAHRES PIRIGNRRAS IEEKRGGNNQ NGNRVSTRNN SGYKNEDGFR RDGYKPRGSG VNGGRGYGRR
401: NSESNGDGKA YQNNGHGNTE AKN

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IT98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.