CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50308	Canola	cytosol	88.84	93.3
AT1G69250.1	Thale cress	cytosol	57.18	58.78
CDY40904	Canola	nucleus	57.4	58.47
CDY04270	Canola	cytosol	54.44	57.31
CDY04271	Canola	cytosol	54.9	56.05
CDX95953	Canola	cytosol	58.54	54.91
CDY07356	Canola	cytosol	49.2	54.68
CDY07355	Canola	cytosol	55.13	46.27
CDX98124	Canola	cytosol	31.89	34.91
CDY36405	Canola	cytosol	32.12	34.81
CDY02983	Canola	cytosol	32.35	34.8
CDY36616	Canola	cytosol	31.66	34.15
CDY51206	Canola	cytosol	31.66	33.9
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	31.21	33.25
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	32.35	30.54
CDY42844	Canola	cytosol	29.84	29.44
CDY16827	Canola	cytosol	30.3	29.3
CDY23092	Canola	mitochondrion	30.98	28.87
CDY47006	Canola	cytosol	27.11	27.48
CDY02179	Canola	plastid	30.98	26.98
CDX77365	Canola	cytosol	27.11	25.11
CDX87195	Canola	plastid	29.61	25.0
CDY00813	Canola	cytosol	27.11	24.79
CDX85353	Canola	cytosol	24.15	22.84
Solyc05g012240.1.1	Tomato	cytosol	21.18	22.63
CDX86290	Canola	cytosol	25.06	22.45
CDY13135	Canola	mitochondrion	21.18	20.13
CDX94739	Canola	cytosol	18.45	19.76
CDY36961	Canola	cytosol	20.73	19.32
CDY22322	Canola	cytosol	17.31	18.63
PGSC0003DMT400072921	Potato	cytosol	21.18	14.72
Solyc05g012230.2.1	Tomato	extracellular	6.38	6.81

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:A0A078IVX4	UniProt:A0A078IVX4	EnsemblPlants:CDY54146
ProteinID:CDY54146	ProteinID:CDY54146.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00013437001	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf
InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177
PANTHER:PTHR10693	PANTHER:PTHR10693:SF41	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427
SUPFAM:SSF54928	UniParc:UPI0004EF1BA1	SEG:seg	:	:	:

Description

BnaCnng26260DBnaCnng26260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVX4]

Coordinates

chrLK033283:-:41256..43764

Molecular Weight (calculated)

47425.7 Da

IEP (calculated)

6.735

GRAVY (calculated)

-0.480

Length

439 amino acids

Sequence
(BLAST)

001: MATEEGVHEA HQVSEAFVVQ YYHIVGKVTQ EAHKLYVDAS VVSRPGPDGT MTSLTSLEAI DKHFLSCDST TFEVLSVDSQ SSLEDGIFVM VIGFLTGEDN
101: LKRKFSQMFY LARQNTAYVV VNDIFRYVDE VSSTPTTLPA AVESVPETEV VEPVHAPAEV KNVAEVNTAV AEAATPLDNG SDKHSVEKSV TAQKPKEIAA
201: DTAAPPVDAG KKSFAAMVAS MARSSAPFQV KASPVVQKPK YMAPSKPREA APAPKAPTVA ASKRERKNDQ RIVDEPGTSI FVSNLPMDAM PPQLYELFKE
301: FGPIKEHGVQ VRSSNARGTC FGFVAFEAVT SVQSVLEAAK NNPFKLGDRK LRVKEKQGKL SLALDQPSYL NIEYDGSKPS GGKRTENGSA ADGSKTENGS
401: AADAEDDFKP IRSRRNRSEK KGNGQNEKNS VQTTPKPKA

Best Arabidopsis Sequence Match ( AT1G69250.1 )
(BLAST)

001: MATEGVVPSA QDIAAEFVRQ YYHVLGQLPH EARRLYVDAS VVSRPDVTGT MMSFTSVEAI NKHILSCDFE NTKFEVLSVD SQNSLEDGIF IMVIGFMTGK
101: DNQRRKFSQM FYLARQNTLV VLNDMLRYVD QEDSSTTETP CEPVTEIVRP ADGLKKAEKT ELKQKNVASV EKSVNAAVEK NAAPLDNGKM KQSEKAVITQ
201: KVTEPDAAPQ PDGAKRSFAD IVGSMAKNAA PFQVKSPVQA PVQKPKYVGQ PRAAAAPQKP AYVSKSIKKN DQKVIEVPGT SIFVANLPLN AMPPQLFELF
301: KDFGPIKENG IQVRSSRGNA NPVCFGFISF ETVASVQSVL QAAKNTPFML ADRKLRVKEK EVDYDGSKPS GKTKGGSNKT QNGSADSSKT ENGSADDSKT
401: NGSAEDGEKE FKQVKSRRNR KKSEAAH

Arabidopsis Description

At1g69250 [Source:UniProtKB/TrEMBL;Acc:Q9LDI9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.