CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004006.1-P	Field mustard	cytosol	99.75	99.75
CDY04270	Canola	cytosol	87.34	82.73
CDY04271	Canola	cytosol	80.25	73.72
CDY07355	Canola	cytosol	80.0	60.42
CDY40904	Canola	nucleus	60.0	54.99
CDX95953	Canola	cytosol	61.77	52.14
CDY50308	Canola	cytosol	53.67	50.72
CDY54146	Canola	cytosol	54.68	49.2
AT1G69250.1	Thale cress	cytosol	50.13	46.37
CDX98124	Canola	cytosol	31.14	30.67
CDY36405	Canola	cytosol	30.38	29.63
CDY02983	Canola	cytosol	28.61	27.7
CDY51206	Canola	cytosol	28.61	27.56
CDY36616	Canola	cytosol	28.35	27.52
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	28.1	26.94
CDY42844	Canola	cytosol	28.61	25.39
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	29.62	25.16
CDY16827	Canola	cytosol	28.61	24.89
CDY47006	Canola	cytosol	27.09	24.71
CDY23092	Canola	mitochondrion	28.61	23.99
CDX77365	Canola	cytosol	27.85	23.21
CDY00813	Canola	cytosol	28.1	23.12
CDY02179	Canola	plastid	28.86	22.62
CDX87195	Canola	plastid	28.1	21.35
CDX85353	Canola	cytosol	24.56	20.91
Solyc05g012240.1.1	Tomato	cytosol	21.52	20.68
CDX86290	Canola	cytosol	25.06	20.2
CDY13135	Canola	mitochondrion	22.03	18.83
CDY36961	Canola	cytosol	21.27	17.83
CDX94739	Canola	cytosol	17.47	16.83
CDY22322	Canola	cytosol	17.22	16.67
PGSC0003DMT400072921	Potato	cytosol	19.49	12.18
Solyc05g012230.2.1	Tomato	extracellular	6.33	6.08

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:A0A078F1S3	UniProt:A0A078F1S3	EnsemblPlants:CDY07356
ProteinID:CDY07356	ProteinID:CDY07356.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00124316001	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf
InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177
PANTHER:PTHR10693	PANTHER:PTHR10693:SF41	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427
SUPFAM:SSF54928	UniParc:UPI0004EEAEDB	SEG:seg	:	:	:

Description

BnaA07g24350DBnaA07g24350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F1S3]

Coordinates

chrLK031978:-:154153..155716

Molecular Weight (calculated)

43117.3 Da

IEP (calculated)

10.061

GRAVY (calculated)

-0.420

Length

395 amino acids

Sequence
(BLAST)

001: MAAEGCVYDA HQVSEAFVKK YYHFVVTATH AAHQFYGVDS LVTRPGPDGT MMSFSSVEAI KKHYRSSYYD GATFDVVSVD TQSSSGGGIL IMVIGFLTGK
101: DNLKRKFSQA FYLARQNRNY VVSNDVHRFV DEEGMFAKSC PQVTKPVEKI KKTGQVHKAT KKKSVNAAEV KKVVAPEKAV VTAPKPKEPV AETSAAPPLV
201: GAKISYASIV LSMLRNAAPV EVKAAPVQKP STVAQPKPHV APAPEKKSDQ KMVDEPGTSI FVSNLPMDAR PLQVYELFKR FGALEGKGVQ IRSSRASGSC
301: FAFVAFESVA SVQSVLKAAK SNQFKLGEHK LRVKEKQVEY NSSNPSDWRS ECGSMSQSGS VDGSKTENVY VGGEEDDGFT LVRSRRNRSG KRRQE

Best Arabidopsis Sequence Match ( AT1G13730.1 )
(BLAST)

001: MALESNAPVV DPNTIGNSFV EKYYNLLYKS PSQVHQFYLD DSVLGRPGSD GEMVSVKSLK AINEQIMSFD YEISKIQILT ADSQASYMNG VVTLVTGLLT
101: VKEGQRMRFS QSFFLVPLNG SYFVLNDVFR YVADEIVEPE ANKKEVEEVI PQVVQPTEQV DEVAEPVTIP TQQPEAKQTT ENTVKKPERA VANGHPKTQE
201: DNVVNDKSNG VDAPKKSFAH IVQDLAQNGA TFNAKASPAK PKSKPVTKPS AARESKAPAP VSEHSSAATI DQQAEGYTIF VANLLMDATP EQLNETFKGF
301: GAITKDGIQV RSYRLKGNCF GFVTFASAEA VKLVLQAHKE SAIRIGNRRV SIEEKRGNND NGRPAMRNGG YRNDNGYRND GYRPRGNGSN GGRGYGRNGS
401: ERRGESRNGE AHNGDGKVHQ NGTVEASR

Arabidopsis Description

At1g13730 [Source:UniProtKB/TrEMBL;Acc:Q9LMX6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.