CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012989.1-P	Field mustard	cytosol	87.7	98.22
CDY23092	Canola	mitochondrion	87.1	93.21
AT5G60980.3	Thale cress	cytosol	79.37	86.96
CDY42844	Canola	cytosol	75.2	85.17
CDY16827	Canola	cytosol	75.4	83.7
CDX87195	Canola	plastid	80.75	78.27
CDY47006	Canola	cytosol	60.32	70.21
KRH03143	Soybean	cytosol, nucleus	46.43	50.87
KRH56802	Soybean	cytosol, nucleus	46.63	50.87
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	47.42	47.8
GSMUA_Achr4P00640_001	Banana	cytosol	33.13	43.15
TraesCS7D01G414000.1	Wheat	cytosol	12.7	40.25
TraesCS7B01G322100.1	Wheat	cytosol	12.7	40.25
TraesCS7A01G421800.1	Wheat	cytosol	12.3	38.75
CDX98124	Canola	cytosol	28.17	35.41
CDX77365	Canola	cytosol	33.13	35.23
CDY00813	Canola	cytosol	33.53	35.21
CDY36405	Canola	cytosol	27.98	34.81
CDY02983	Canola	cytosol	25.99	32.11
CDY51206	Canola	cytosol	25.99	31.95
CDY36616	Canola	cytosol	25.79	31.94
CDY50308	Canola	cytosol	26.19	31.58
CDY54146	Canola	cytosol	26.98	30.98
CDX85353	Canola	cytosol	28.37	30.82
KXG39124	Sorghum	cytosol	9.72	30.62
Os03t0418800-01	Rice	mitochondrion	31.75	30.59
TraesCS3D01G392700.1	Wheat	cytosol, nucleus, plastid	32.14	29.72
TraesCS3B01G431000.2	Wheat	cytosol	32.14	29.62
HORVU0Hr1G007150.3	Barley	cytosol	16.27	29.39
CDX86290	Canola	cytosol	28.57	29.39
CDX94739	Canola	cytosol	23.81	29.27
TraesCS3A01G398600.1	Wheat	cytosol	31.75	29.2
Os07t0603100-01	Rice	extracellular	32.94	29.17
CDY22322	Canola	cytosol	23.61	29.17
HORVU3Hr1G089630.1	Barley	cytosol	31.15	28.91
CDY07356	Canola	cytosol	22.62	28.86
CDY13135	Canola	mitochondrion	26.39	28.79
CDY40904	Canola	nucleus	24.21	28.31
Zm00001d047289_P003	Maize	plasma membrane	32.74	28.25
CDY36961	Canola	cytosol	26.39	28.24
CDY04270	Canola	cytosol	23.21	28.06
CDY04271	Canola	cytosol	23.02	26.98
EER94684	Sorghum	cytosol	31.94	25.97
CDX95953	Canola	cytosol	24.01	25.85
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	30.36	24.56
TraesCS2D01G183500.1	Wheat	cytosol	30.36	24.29
TraesCS2B01G202200.1	Wheat	cytosol	30.16	24.24
Zm00001d022071_P002	Maize	cytosol	27.98	24.06
TraesCS2A01G176100.1	Wheat	cytosol, nucleus, plastid	29.96	23.97
CDY07355	Canola	cytosol	23.61	22.75
GSMUA_Achr1P24520_001	Banana	nucleus	40.87	20.85
OQU90215	Sorghum	cytosol	29.76	19.38

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:A0A078EN99	EnsemblPlants:CDY02179	ProteinID:CDY02179
ProteinID:CDY02179.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00113585001	InterPro:IPR000504
InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF27
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0004EE911E
SEG:seg	:	:	:	:	:

Description

BnaA03g39880D

Coordinates

chrLK031932:-:527095..530447

Molecular Weight (calculated)

53961.0 Da

IEP (calculated)

5.833

GRAVY (calculated)

-0.500

Length

504 amino acids

Sequence
(BLAST)

001: MIVAQITVQL QFGSISHTSI FSVCRCLARP CSVSQLLQQI SLCPLSLPPS FQITMAQQEA SPSPGAEVVG RAFVEQYYHI LHQSPGLVHR FYQDSSLLTR
101: PDATGAVTTV TTMLAINDKI MSLKYEDYTA EIETADAQES HERGVIVLVT GRLTGTDNVR KKFSQTFFLA PQDKGYFVLN DVFRFLEEKE VTTQAINGTT
201: TRDVQAPVEP ERVVVSHEAE AEPEPVATIE EEEDLENVAE VYNPSDKDEG VVVDAEPIEP PTQLSHSEVP SVPQGDAPKH SYASILKLMK SGPAPTQVAR
301: SKPRVAAPVV TKPKPAAPPA EPAAAAENVP NSSNVDVEDD GHSIYVRNLP FDTTPTQLEE VFKSFGAIKH EGIQVRSNKQ GFCFGFVEFE TASGKQSALE
401: ASPVTIGDRQ AVLEEKKTNS RGGGNNGGGR GRYFGGRGGF RNDSFKGGRG GGGGRGGYGR GEYSGRPRSS NPRNNGEGYQ RVPQNGGSGR GGGGHGGPRG
501: GASS

Best Arabidopsis Sequence Match ( AT5G60980.4 )
(BLAST)

001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QGFCFGFVEF ETSSGKQSAL EASPVTIGDR QAVVEEKKTN SRGGGNNGGS RGRYFSGRGS FRNESFKGGR
401: GGGGRGGYGR GGGEFSGRPK SSNPRNGGEG YQRVPQNGGG GRGGRGEGGR GGARGGGSS

Arabidopsis Description

AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.