Factsheet for Os03t0418800-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G089630.1	Barley	cytosol	62.72	60.41
TraesCS3B01G431000.2	Wheat	cytosol	61.76	59.05
TraesCS3A01G398600.1	Wheat	cytosol	61.38	58.58
TraesCS3D01G392700.1	Wheat	cytosol, nucleus, plastid	59.85	57.43
KXG39124	Sorghum	cytosol	16.06	52.5
HORVU0Hr1G007150.3	Barley	cytosol	27.92	52.33
EER94684	Sorghum	cytosol	60.61	51.13
Zm00001d047289_P003	Maize	plasma membrane	56.98	51.03
GSMUA_Achr4P00640_001	Banana	cytosol	32.7	44.19
Os07t0603100-01	Rice	extracellular	47.99	44.11
Solyc10g083060.1.1	Tomato	cytosol	6.5	40.48
KRH45051	Soybean	cytosol	35.18	39.83
KRH01288	Soybean	cytosol	34.8	38.24
KRH56802	Soybean	cytosol, nucleus	33.46	37.88
KRH03143	Soybean	cytosol, nucleus	33.08	37.61
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	35.95	37.6
Solyc02g030530.1.1	Tomato	cytosol	20.46	37.54
Os02t0497700-01	Rice	cytosol, nucleus, plasma membrane	34.42	37.5
Solyc02g066830.2.1	Tomato	cytosol	27.53	36.09
Bra029343.1-P	Field mustard	cytosol	30.98	36.08
VIT_01s0011g00400.t01	Wine grape	cytosol	32.89	35.54
Solyc02g088920.2.1	Tomato	cytosol	26.77	35.44
Bra012989.1-P	Field mustard	cytosol	30.4	35.33
CDY42844	Canola	cytosol	30.02	35.28
AT5G60980.3	Thale cress	cytosol	30.78	35.0
Os04t0372800-01	Rice	nucleus, plasma membrane	32.5	34.98
Bra035946.1-P	Field mustard	cytosol	29.64	34.14
CDY16827	Canola	cytosol	29.64	34.14
CDY23092	Canola	mitochondrion	30.4	33.76
VIT_14s0068g00310.t01	Wine grape	cytosol	32.7	32.33
CDY47006	Canola	cytosol	26.39	31.87
CDY02179	Canola	plastid	30.59	31.75
Solyc02g032790.1.1	Tomato	cytosol	17.78	30.79
CDX87195	Canola	plastid	29.64	29.81
PGSC0003DMT400003713	Potato	cytosol	27.92	29.55
Solyc02g030490.1.1	Tomato	cytosol	12.62	26.83
Os02t0131700-00	Rice	plastid	21.61	25.22
KRH57274	Soybean	cytosol, mitochondrion	9.75	23.72
Os04t0510500-01	Rice	cytosol	18.93	21.43
GSMUA_Achr1P24520_001	Banana	nucleus	38.43	20.34
Os02t0131800-01	Rice	cytosol, peroxisome, plasma membrane	1.34	1.28

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	UniProt:A0A0P0VYT3	ProteinID:BAS84723.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222
InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os03g0418800	EnsemblPlants:Os03t0418800-01
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF41
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI00039388C8
SEG:seg	:	:	:	:	:

Description

RNA recognition motif domain domain containing protein. (Os03t0418800-01)

Coordinates

chr3:+:17434440..17438559

Molecular Weight (calculated)

56764.4 Da

IEP (calculated)

8.922

GRAVY (calculated)

-0.596

Length

523 amino acids

Sequence
(BLAST)

001: GFFHPHAGGG VVSRRRRRTP LCFLPRSRSS PAPQAMAVQA GTPATPISPQ VISGAFVQQY YHILHETPDQ VYKFYQDASI VGRPDSNGVM KYVSTTADIN
101: KIILSMDFSN YLTEIETADA QLSHQDGVLI VVTGSLTSEG ICRRFTQSFF LAPQESGGYV VLNDIFRFIV ERPPVAISQV SQENENNQNT ATLPETDPNP
201: AGDGMISEPV AVENNVAEGE VTNSTVDGTS IENNATAAVE PPVQMTKEEP RKISVAAPPP PAQKDVTKKS YASIVKVMKE VSLTPVVKPK PAPKHVVKTV
301: EASEKPSVKS SQTVEITPND NNDAENNTSN DEQGYSVFVK SLPHNVTVQT VEEEFKKFGA IKPGGIQVRN NKIDRFCFGF IEFESQQSMQ AAIEASPIHM
401: GGKEVFVEEK RTTTRVVNGV VITRGDNGNA GGGGRYQSGR GGYRGDNFRG RGGGYANSGN YRGGDNFSRR NDLRNRNEFS GRGRGPPPGN GYQNNGFHPA
501: RPFQNGNGRF TRVNGPRQTP VAA

Best Arabidopsis Sequence Match ( AT5G60980.2 )
(BLAST)

001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QQGFCFGFVE FETSSGKQSA LEASPVTIGD RQAVVEEKKT NSRGGGNNGG SRGRYFSGRG SFRNESFKGG
401: RGGGGRGGYG RGGGEFSGRP KSSNPRNGGE GYQRVPQNGG GGRGGRGEGG RGGARGGGSS

Arabidopsis Description

AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.